RNA id: TU44633


Basic Information

Item Value
RNA id TU44633
length 341
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G35709
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 33924845 ~ 33925369 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGCCCGGGTACATCCAGCATATTGGAAATACTCCTGTCACACATGTCCACTTCGGGCAAGttcttctccctgctctcctccACTATCTTCTTCAAAGACTTCGACATTTTCTTTTTTTTGGCCGGTTGTatccaaataaaattaaacgAACAACAATTGAAATGATGCTAAACTCTAAAAAAGAAAGGTTTCGGACGAACTCGGCGCTCGCGGATGTGAAGAGCTGCGCGCACCCAACCCAGCGGAACTGCGCGTGCGCCACCCCGCGCCCAGCCCGTCCAGCGCCGCAGAGCCGCCCGTGTGACCAATCACACCGAGACACCGCCCTGTATCCAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44610 lncRNA upstream 137060 33787518 ~ 33787785 (+) True G35691
TU44608 lncRNA upstream 159898 33764721 ~ 33764947 (+) True G35689
TU44574 lncRNA upstream 200072 33679123 ~ 33724773 (+) True G35658
TU44549 lncRNA upstream 336258 33588383 ~ 33588587 (+) True G35636
TU44499 lncRNA upstream 539660 33384746 ~ 33385185 (+) True G35595
TU44740 lncRNA downstream 580689 34506058 ~ 34578440 (+) False AMCG00019638
TU44757 lncRNA downstream 671358 34596727 ~ 34596933 (+) True G35799
TU44770 lncRNA downstream 737700 34663069 ~ 34714039 (+) True G35812
TU44773 lncRNA downstream 761117 34686486 ~ 34719861 (+) True G35814
TU44776 lncRNA downstream 814520 34739889 ~ 34740119 (+) True G35816
AMCG00019626 mRNA upstream 79759 33799547 ~ 33845086 (+) True AMCG00019626
AMCG00019620 mRNA upstream 178195 33744536 ~ 33746650 (+) True AMCG00019620
AMCG00019621 mRNA upstream 219383 33694302 ~ 33705462 (+) True AMCG00019621
AMCG00019619 mRNA upstream 230620 33673551 ~ 33694225 (+) True AMCG00019619
AMCG00019614 mRNA upstream 782950 33118132 ~ 33141895 (+) True AMCG00019614
AMCG00019627 mRNA downstream 129234 34054603 ~ 34063226 (+) True AMCG00019627
AMCG00019632 mRNA downstream 168358 34093727 ~ 34100512 (+) True AMCG00019632
AMCG00019635 mRNA downstream 255413 34180782 ~ 34214543 (+) True AMCG00019635
AMCG00019636 mRNA downstream 293538 34218907 ~ 34308944 (+) True AMCG00019636
AMCG00019637 mRNA downstream 463844 34389213 ~ 34442804 (+) True AMCG00019637
TU44379 other upstream 1531869 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 1597569 32324400 ~ 32327276 (+) True AMCG00019609
TU43819 other upstream 4620199 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 10229044 23672125 ~ 23695801 (+) True G34511
TU43058 other upstream 11299640 22615623 ~ 22625205 (+) False AMCG00019475
TU44804 other downstream 914947 34840316 ~ 34851323 (+) True AMCG00019641
TU44996 other downstream 2121121 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 2121121 36046490 ~ 36063845 (+) False AMCG00019662
TU45071 other downstream 2366977 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 3588618 37513987 ~ 37516027 (+) True G36212

Expression Profile