RNA id: TU44747


Basic Information

Item Value
RNA id TU44747
length 1369
lncRNA type read_through
GC content 0.38
exon number 2
gene id G35792
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 34506033 ~ 34578472 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttcaATACTACAAAGCTGCCTAACACAATAACACTGAAACAAGGGAAATACTTAATGTGGCAGGTAGCATTGGCATATAGACaggacgaaacaaacaaacaaacaaaacacatatgtGAAAGTAATTACAATACATTCTGGAATAAAACACTTCATAATTAGTTATCATGCATGtataataacatttgtaatggcacattatttttaacttgcTCCTTTAAAAAGATTATCCTGTCTCAAggatcaaaacaacaaacacagttTTTGATTctccaaaccaaaataaaacaaaacaaaacattataaaattattgcatttttatatatgaattCTGTATAAATCTTAAGCAAGGCATCTTGTCGTATTACCCACACGTGGATAAGCAATGATTGTCATTAtcaaaatggctattattcttCACTTgagcacaaaaaatatataatatatacagaggAACATAATTATtccctttttctctttcagctTATGAAGGATATGCTTTGCTATGTGTTGGCTTTCCAGTTTGATTTTATCAACCCTGTATTTCTTATTCAcaataagaaatatttaaaacctaGATACTAAAGCTGTGTATACTAAAATAAGCCTTTGAGACTTTGCTATTTCTTATGCTAATCATTTCTCTGCTTCTTCAATGGTGTTACATCCCTTATTCACAAATGTACTGCAGTATAGCAGCTGAAAACCTCAGTATAGTGTGGAAAAGCCATGGGAAAACTACCAAATCACTGTGCAAAATTTACTGTGGTCAACTTCATAAGGGAATGTTTACGAATATCCGTCACAGAGTCCTGAATGTTTATCAGGAACTCGGCACGTGCACCGTGAagcatatgaaaaaaaaataggttttcATTTTCTACACGGGTCAACGTTTTAAGCCTTGATAACAGTGATGGTAATGCTCCGTCGCTTTTTGGAGGGGCAcctcgctttttttttttttttttttttttttcctttctcggTAACCTGACAGTTTGTGAAACGAGCTGAAAGCCCGCCCTGGATACAAAAAACCCCACAACACTGTGTTCTTCACACTCTCTGCAGGCACAAGTGTCTCGCAGTCTTACAGGTTAACCCAAACAGTGAGGACAAGACTCAAAAACagtgagaaagacagagacaacGTGGGGGCACACCCTGAGAAGGTCAGTGTGGACACCTTCACCTCAGACGTAAGGAACGCCGACAGGGGGACGTGTGACACCAGCGTGGGACTCCCGTAGTTTATCAGCGAGTCGATCTTCTCTGCCTCCTTATTGCAAGCTTCAACCTGAATGATACAAATAAAGGGACACTTGAGGATGGAATAACAGTCCAGCACAGGGCGATGGAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44676 lncRNA downstream 442899 33996555 ~ 34063134 (-) False G35735
TU44677 lncRNA downstream 442899 34018101 ~ 34063134 (-) False G35735
TU44672 lncRNA downstream 442899 34060075 ~ 34063134 (-) True G35735
TU44609 lncRNA downstream 725578 33780221 ~ 33780455 (-) True G35690
TU44570 lncRNA downstream 835528 33670211 ~ 33670505 (-) True G35656
TU44761 lncRNA upstream 66663 34645135 ~ 34650231 (-) True G35803
TU44768 lncRNA upstream 72230 34650702 ~ 34650987 (-) True G35810
TU44973 lncRNA upstream 1356324 35934796 ~ 35935181 (-) False AMCG00019665
TU45001 lncRNA upstream 1476007 36054479 ~ 36061297 (-) True G36016
TU45034 lncRNA upstream 1589494 36167966 ~ 36168171 (-) True G36038
AMCG00019634 mRNA downstream 381415 34120362 ~ 34124618 (-) True AMCG00019634
AMCG00019633 mRNA downstream 390913 34090291 ~ 34115120 (-) True AMCG00019633
AMCG00019630 mRNA downstream 453545 34036361 ~ 34052488 (-) True AMCG00019630
AMCG00019631 mRNA downstream 471107 33931143 ~ 34034926 (-) True AMCG00019631
AMCG00019629 mRNA downstream 581080 33901289 ~ 33924953 (-) True AMCG00019629
AMCG00019646 mRNA upstream 141199 34719671 ~ 34727267 (-) True AMCG00019646
AMCG00019644 mRNA upstream 244244 34822716 ~ 34832157 (-) True AMCG00019644
AMCG00019643 mRNA upstream 272516 34850988 ~ 34855000 (-) True AMCG00019643
AMCG00019648 mRNA upstream 313994 34892466 ~ 34937832 (-) True AMCG00019648
AMCG00019647 mRNA upstream 394338 34972810 ~ 34982687 (-) True AMCG00019647
TU44357 other downstream 2272635 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 4820731 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 4860070 29638566 ~ 29645963 (-) False AMCG00019554
TU43847 other downstream 4955871 29545231 ~ 29550162 (-) False AMCG00019556
TU43838 other downstream 4984049 29517996 ~ 29521984 (-) True G35067
TU44832 other upstream 476547 35055019 ~ 35055444 (-) True G35867
TU45993 other upstream 7965644 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 8065852 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 8719759 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 8998837 43577309 ~ 43656444 (-) False AMCG00019768

Expression Profile