RNA id: TU44903



Basic Information


Item Value
RNA id TU44903
length 590
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G35933
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 35714414 ~ 35715003 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGGGCTCTGGTTGTGCGTTTATACGTTCATTCCAGCTATGTATGGTCgtcattcatgttttctttttggacTTTCTGCCGTGGCACATTGCTATGACATAAGTAATCACCTGTACATCCAAATGATTGCATTTAGCTTACAGCTATGCATTATGATTGGAAGCAGTAGTACACTAACCTTGTAGTGTATATAAGAATATCAATATGCACCTCAACAGCAAGAATCGGTATTATGCTCCAGTTTATAGGCTATAGGACCCCTTTCCACTTATggtaaacataaataaaaggaaactgaaattgCATTCATTGTATTCATCCAAATGCCTGTTATGAAGTattattctgctttttgttaCATGGTATGTCTGCATGAAATCAACAGAAATGTTGTCCTCTGGTGGTGTAGATTggaagtttaatttgtttttcgtttttttttatttaaaccagaTGATTATTATTGGGCTGGTGTGTTTATTCAGTGTGACACACACTGTGCATTAGCATTATCAGACTATGTCTATGCACTGCTGCATGGGGCCTCCCAAAGCAATGTGTCAAATTCAGATCTATAGCTTCAAAGTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44845 lncRNA upstream 615497 35098707 ~ 35098917 (+) True G35880
TU44839 lncRNA upstream 628464 35077039 ~ 35085950 (+) True G35874
TU44780 lncRNA upstream 904373 34809659 ~ 34810041 (+) True G35820
TU44776 lncRNA upstream 974295 34739889 ~ 34740119 (+) True G35816
TU44773 lncRNA upstream 994553 34686486 ~ 34719861 (+) True G35814
TU45029 lncRNA downstream 444811 36159814 ~ 36160156 (+) True G36033
TU45043 lncRNA downstream 490425 36205428 ~ 36208506 (+) True G36046
TU45051 lncRNA downstream 511035 36226038 ~ 36227349 (+) True G36054
TU45094 lncRNA downstream 912687 36627690 ~ 36628070 (+) True G36088
TU45100 lncRNA downstream 1196538 36911541 ~ 36911979 (+) True G36094
AMCG00019653 mRNA upstream 340131 35351443 ~ 35374283 (+) True AMCG00019653
AMCG00019651 mRNA upstream 566123 35106126 ~ 35148291 (+) True AMCG00019651
AMCG00019641 mRNA upstream 867642 34844882 ~ 34846772 (+) False AMCG00019641
AMCG00019640 mRNA upstream 1004491 34685047 ~ 34709923 (+) True AMCG00019640
AMCG00019639 mRNA upstream 1064156 34628457 ~ 34650258 (+) True AMCG00019639
AMCG00019660 mRNA downstream 1342 35716345 ~ 35732258 (+) True AMCG00019660
AMCG00019662 mRNA downstream 331474 36046477 ~ 36063850 (+) True AMCG00019662
AMCG00019669 mRNA downstream 472049 36187052 ~ 36190796 (+) True AMCG00019669
AMCG00019670 mRNA downstream 482048 36197051 ~ 36201191 (+) True AMCG00019670
AMCG00019671 mRNA downstream 577349 36292352 ~ 36299513 (+) False AMCG00019671
TU44804 other upstream 863091 34840316 ~ 34851323 (+) True AMCG00019641
TU44379 other upstream 3321438 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 3387138 32324400 ~ 32327276 (+) True AMCG00019609
TU43819 other upstream 6409768 29300955 ~ 29304646 (+) False AMCG00019551
TU43194 other upstream 12018613 23672125 ~ 23695801 (+) True G34511
TU44996 other downstream 331487 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other downstream 331487 36046490 ~ 36063845 (+) False AMCG00019662
TU45071 other downstream 577343 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 1798984 37513987 ~ 37516027 (+) True G36212
TU46002 other downstream 6841537 42556540 ~ 42558936 (+) True AMCG00019747

Expression Profile