RNA id: TU45029


Basic Information

Item Value
RNA id TU45029
length 343
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G36033
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36159814 ~ 36160156 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATAACTGGGTGCCCAGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGCGCACCGTGAGCAGATCAAGGTGCAGCAACAACTCATGAGCAAGAAGGACAACCGACGTGATGCGAACTTCAGCGAAAGTGTCCTGTCACGCGTCGGTCGggccagagcagagcaggcCAGGAAGAGAGGGACTTTTGTGAAAGCACTAGAAATAGAAGCACCAGTCCTTCTCTGGCGAAGATGAAAGCATCAACATACGATCATTAAAtttctttcccttctctgtttaatctacaaaataaaatgataatgttCTTCTGTTCAAA

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44903 lncRNA upstream 444811 35714414 ~ 35715003 (+) True G35933
TU44845 lncRNA upstream 1060897 35098707 ~ 35098917 (+) True G35880
TU44839 lncRNA upstream 1073864 35077039 ~ 35085950 (+) True G35874
TU44780 lncRNA upstream 1349773 34809659 ~ 34810041 (+) True G35820
TU44776 lncRNA upstream 1419695 34739889 ~ 34740119 (+) True G35816
TU45043 lncRNA downstream 45272 36205428 ~ 36208506 (+) True G36046
TU45051 lncRNA downstream 65882 36226038 ~ 36227349 (+) True G36054
TU45094 lncRNA downstream 467534 36627690 ~ 36628070 (+) True G36088
TU45100 lncRNA downstream 751385 36911541 ~ 36911979 (+) True G36094
TU45105 lncRNA downstream 785945 36946101 ~ 36946498 (+) True G36098
AMCG00019662 mRNA upstream 95964 36046477 ~ 36063850 (+) True AMCG00019662
AMCG00019660 mRNA upstream 427556 35716345 ~ 35732258 (+) True AMCG00019660
AMCG00019653 mRNA upstream 785531 35351443 ~ 35374283 (+) True AMCG00019653
AMCG00019651 mRNA upstream 1011523 35106126 ~ 35148291 (+) True AMCG00019651
AMCG00019641 mRNA upstream 1313042 34844882 ~ 34846772 (+) False AMCG00019641
AMCG00019669 mRNA downstream 26896 36187052 ~ 36190796 (+) True AMCG00019669
AMCG00019670 mRNA downstream 36895 36197051 ~ 36201191 (+) True AMCG00019670
AMCG00019671 mRNA downstream 132196 36292352 ~ 36299513 (+) False AMCG00019671
AMCG00019677 mRNA downstream 930867 37091023 ~ 37169287 (+) True AMCG00019677
AMCG00019676 mRNA downstream 1018203 37178359 ~ 37213519 (+) True AMCG00019676
TU44996 other upstream 95969 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 95969 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 1308491 34840316 ~ 34851323 (+) True AMCG00019641
TU44379 other upstream 3766838 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 3832538 32324400 ~ 32327276 (+) True AMCG00019609
TU45071 other downstream 132190 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 1353831 37513987 ~ 37516027 (+) True G36212
TU46002 other downstream 6396384 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 6800500 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 7101738 43261894 ~ 43270885 (+) False AMCG00019758

Expression Profile