RNA id: TU45043


Basic Information

Item Value
RNA id TU45043
length 3056
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G36046
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36205428 ~ 36208506 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCATAAACTCATCCTAACATGCGACCAGCACAGCCTTGTGGAGCAGCCATGCCCTTGCACTGCCGGGTCAGCTCTGTTTATACAGCTATTATAGAAATCTTCTATCAGTCAACAGCATCCTGTCAACCTCAGCAGAAAGTCACCTGTTAAAGCCTACGGGCAGCGGCGTGTCCAGAAAATGTTCAACGAGGTGGCCGATTGGGGGCACAGGGCAAGTTGATGGGGGCCATCCTATCATCACCGCTCTTACGGAGTGTCGTTCAGGGGGCTGTTTGGCGGGGGTGCTGACGGTATTTCATTCTCGCTGGCAGGGGGGGCTGATGGCATACGTAGGGCGGGTGCTGGGGGACCAGCCTCATTTCAGGGGGGCCATGGCCACCCCAGACCCCCCCTAGACACACCCCTGCCTACGAGTGCCCCGATGCAACAAGTTAATATTACAGGTAGGTAGCTATCTagctaacattattattattattattattattattattattattatgttttatttcttagcaaagtgcaaaaatacagttcagtacaaggcacataacattacaaattcaaatttacataatacaaagcaattcaaatcataatacattttacaaattccaatttacacaatatgaggtcttacatcctggattgtaaaagctgatgagtgcagacaagatgttaggtcacagtcaaggaccAAGGGAatgggagcataggggaaatcaaaataaacaatacaagtactagtaatgcaaggcaagtagtatgataaacattgtaatcttacaggagagtaaatggctaaattacaagtattatctgaaaagatgtgtcttgagtaagcgccggaagaaGGTAGTAGCAAGTTAGTCGTATTAATGGTCAAGTTAGCAAAAATAACTAACATCAGCGTTAGATAGTAAATATCCCCCCTCTAAACTTTTGGGGTACCTGCTGTCGGATTTGCAGGTGTTGTAGGTACACTGTTTCACCATTTGGTGCCTTAACGACAAAAGCTTGACGGACCTTCTTTAAGTAGTGACCGGTTGCTAAGGTAGGATTGGACAAGGACTGTTTGGGGGCAGGACTTTGCGAATGGTCAATTAtaacctttttcattttgtgctcAAATCAGGAGCAACATCTTTTAGTCTGTCACCTAAATTTGAGCCAAATGCTGTTAACAAACTTCCATAAATATTGCACTTTCATTGAAATGTCATTGTTCCAGTTGGTATACCATCTATGTCTTCCAGATGCCATCTTTTTAACGTTTTGACAGTGTGATCTGTAATATAGTTCTTCAGTTCTTTTGGGAAGCATTTTAGTtcatatattacatttgatgtagaatataatgcaaatgcaGAGACGGAAGCCAGAAATAACTTGGATCTTGCCCACAGTGCTACCAGCAGCTTGTACTTTTTGACACAACAGATGTAGAAACATATTTAGCAAATTTACCAAACAGAGTGGAACGCTGCCAGTGTTAGTCCTTCGTCTTAATAATAACCATCGTCAGTTTTATGCAGCACTAAACATATGGAAATACTGCAACATTTCAGGAAACGAAGCACTACAGGATAAATCAACATCCAATGATATGtctttcagtttaatatttgCAAGTCTTCCCATATAATAGCttattatatgtataaacaaCACTTTGCTGTGACAGGGCACTCTTCGATGGGTGAAGATTCACACTGGAAAGGAAACTGGGTTTTGTACAGGTCATCTATCTCAGGACAGTGAGGCCTGTATAAACCCGAATGTTAATTGAACACCAGAAGTACTCACTTGTTCTCCCGTTGCCACGCCAATTCCGAGGGGAGCCAAAGCCTGAAACACAAGCAGGTGTAACAAACCCAGCTGGTATAGAGATGCCCATATATGCTCATATCCAATGGGATAAACATGCATCAGTTGTACTGTATTACTGCTCTTAATCTCcttttaataaagataaataaaaccaaagatAGTTAATAGTATCTTTTACATTGTTTACACTTTCATTCAATTTCCTGTGAAATGTTTAAGATGCAATTTGAACGCCTACAAAGAAATACTACCACAACTATGCTTCAGACCtcaccatttttgttttaccataGATAGCATTGAAACTCATCAGCATCACCATCTACTGCTGAGGCCAACATGTGAGTGAGTAACAAATCAGCATCTAATCCAAGACCCAGTTCCCAGCAACCTTTTTCAGACCAGAGCTGCAGTCTGAGTAAAAAGGAGGTGACAGGAAGCTATTTACAGCTTTTGCTGTGGGCCAAGCTTTTAAATGGAGTAGAAATGGAAGCAAAATGAATGTATGGTCAATTACATCGCCCAGTCTGTGCCATCTATTAGCTCGCTTCCTTACTTTGGCAATGGCAGCGTGTCCCAGGATGTCATCAGGGGAAGTGGGTTCCTCTATCCAGAGAGGCTTAAACTCAGCCAACCTGGAAACCCACTCAATGGCTTCTGCAACATCCCATCGCTGATTGGCATCTATCATCTGAAAGGGGAGAGGAAATGCTGAAGATTGAATTGTGCACCGATTGCTTGTTTGCAGTAGTGACGTGATGCTTCTCTCTTTATAGGTTGGCGCTGTTTGGATACACTGCAATACATCTTTCTTTCCGATCAAACACTTAAATTGCATTGAAATATGTGGCTAAGTGgtgtttatttcagtattttcattGACGGCTCCACTGCAGGTGAATTGTGTACAGTGTTCTGCTACATGCTCCAACTTGATTTCATAATTATTCAATAAATCATTGTTCCTTCCTCttacctatttaaaaaaataaagtatagaCACGTGGTCCATATACTTGTGGGCCTTTGATTCCTGTGGAAACTCCCTCTAACTGCTAACTGCAAAGACTGCTGATAATATACCTGCCTGATTTACCATTCTGttaaaaaaagcagagaaacttACCAGAACATTGTCGGGTCCTATCATCTTCCTTATGAGACTGCACCTGCGAATATCATCCTGTAAATCTGCCCCCACTTTCACCTTAAACCTACCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45029 lncRNA upstream 45272 36159814 ~ 36160156 (+) True G36033
TU44903 lncRNA upstream 490425 35714414 ~ 35715003 (+) True G35933
TU44845 lncRNA upstream 1106511 35098707 ~ 35098917 (+) True G35880
TU44839 lncRNA upstream 1119478 35077039 ~ 35085950 (+) True G35874
TU44780 lncRNA upstream 1395387 34809659 ~ 34810041 (+) True G35820
TU45051 lncRNA downstream 17532 36226038 ~ 36227349 (+) True G36054
TU45094 lncRNA downstream 419184 36627690 ~ 36628070 (+) True G36088
TU45100 lncRNA downstream 703035 36911541 ~ 36911979 (+) True G36094
TU45105 lncRNA downstream 737595 36946101 ~ 36946498 (+) True G36098
TU45113 lncRNA downstream 851912 37060418 ~ 37060644 (+) True G36106
AMCG00019670 mRNA upstream 4237 36197051 ~ 36201191 (+) True AMCG00019670
AMCG00019669 mRNA upstream 14632 36187052 ~ 36190796 (+) True AMCG00019669
AMCG00019662 mRNA upstream 141578 36046477 ~ 36063850 (+) True AMCG00019662
AMCG00019660 mRNA upstream 473170 35716345 ~ 35732258 (+) True AMCG00019660
AMCG00019653 mRNA upstream 831145 35351443 ~ 35374283 (+) True AMCG00019653
AMCG00019671 mRNA downstream 83846 36292352 ~ 36299513 (+) False AMCG00019671
AMCG00019677 mRNA downstream 882517 37091023 ~ 37169287 (+) True AMCG00019677
AMCG00019676 mRNA downstream 969853 37178359 ~ 37213519 (+) True AMCG00019676
AMCG00019680 mRNA downstream 1157468 37365974 ~ 37371256 (+) True AMCG00019680
AMCG00019681 mRNA downstream 1163873 37372379 ~ 37378679 (+) True AMCG00019681
TU44996 other upstream 141583 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 141583 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 1354105 34840316 ~ 34851323 (+) True AMCG00019641
TU44379 other upstream 3812452 32330637 ~ 32392976 (+) False AMCG00019609
TU44375 other upstream 3878152 32324400 ~ 32327276 (+) True AMCG00019609
TU45071 other downstream 83840 36292346 ~ 36299547 (+) True AMCG00019671
TU45249 other downstream 1305481 37513987 ~ 37516027 (+) True G36212
TU46002 other downstream 6348034 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 6752150 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 7053388 43261894 ~ 43270885 (+) False AMCG00019758

Expression Profile