RNA id: TU45086


Basic Information

Item Value
RNA id TU45086
length 217
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G36080
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36537687 ~ 36537903 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccatggacatgcaattgcacaactgtctttggaaatgtcctgcactgcatgaccagtatctgagcacgactgccttcttgtcttccagcaacagccccctctgagggtccaacgaggcacctcgtcccccaccatggaagtctgatgaggcacaacccaccccagaggcacctcaccatggagggtcaacggggcatccacacccaaggtctgacga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45080 lncRNA downstream 138028 36399412 ~ 36399659 (-) True G36074
TU45034 lncRNA downstream 369516 36167966 ~ 36168171 (-) True G36038
TU45001 lncRNA downstream 476390 36054479 ~ 36061297 (-) True G36016
TU44973 lncRNA downstream 602506 35934796 ~ 35935181 (-) False AMCG00019665
TU44768 lncRNA downstream 1886700 34650702 ~ 34650987 (-) True G35810
TU45088 lncRNA upstream 29026 36566929 ~ 36567264 (-) True G36082
TU45099 lncRNA upstream 221127 36759030 ~ 36759351 (-) True G36093
TU45101 lncRNA upstream 373723 36911626 ~ 36911979 (-) True G36095
TU45103 lncRNA upstream 383680 36921583 ~ 36921806 (-) True G36097
TU45173 lncRNA upstream 629530 37167433 ~ 37186156 (-) True G36160
AMCG00019672 mRNA downstream 297306 36217304 ~ 36240381 (-) True AMCG00019672
AMCG00019673 mRNA downstream 321314 36196898 ~ 36216373 (-) True AMCG00019673
AMCG00019668 mRNA downstream 459532 36069584 ~ 36078155 (-) True AMCG00019668
AMCG00019667 mRNA downstream 495570 36021356 ~ 36042117 (-) True AMCG00019667
AMCG00019663 mRNA downstream 522981 35999381 ~ 36014706 (-) True AMCG00019663
AMCG00019674 mRNA upstream 107464 36645367 ~ 36715736 (-) True AMCG00019674
AMCG00019675 mRNA upstream 178034 36715937 ~ 36742382 (-) True AMCG00019675
AMCG00019678 mRNA upstream 534515 37072418 ~ 37089963 (-) True AMCG00019678
AMCG00019679 mRNA upstream 660353 37198256 ~ 37220428 (-) True AMCG00019679
AMCG00019682 mRNA upstream 700986 37238889 ~ 37309104 (-) True AMCG00019682
TU44832 other downstream 1482243 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 2015417 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 4304289 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 6852385 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 6891724 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 6006213 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 6106421 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 6760328 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 7039406 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 8358596 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile