RNA id: TU45101


Basic Information

Item Value
RNA id TU45101
length 354
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G36095
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36911626 ~ 36911979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCTCAGCGTACAAGGGTTTCCTTGCTTAACTTGGAGCTCAGTAGGCCTCGTCATACCTTTAGGTTCCCTTGGCATCTCTCCCCGCAGATCTGTCCTACCTGGAGTTCACCCTACTGTGAACCTCCGCTGTACAGTcaacctttctatttgttttacctctacctctccacaggttctctttaaattacaatctgagAGCCTCACACAATCCcgagatcaaatctaaatatacagggtggtcATTTTTAAAGCTACTCACCCATATTTTGGTCccgggagtggaggcaagttcagatcctcgTTCGTGACGCCAGGTTGTtgaaccgtctcggaaataagtggagaagtcgtg

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45099 lncRNA downstream 152275 36759030 ~ 36759351 (-) True G36093
TU45088 lncRNA downstream 344362 36566929 ~ 36567264 (-) True G36082
TU45086 lncRNA downstream 373723 36537687 ~ 36537903 (-) True G36080
TU45080 lncRNA downstream 511967 36399412 ~ 36399659 (-) True G36074
TU45034 lncRNA downstream 743455 36167966 ~ 36168171 (-) True G36038
TU45103 lncRNA upstream 9604 36921583 ~ 36921806 (-) True G36097
TU45173 lncRNA upstream 255454 37167433 ~ 37186156 (-) True G36160
TU45188 lncRNA upstream 413819 37325798 ~ 37326994 (-) True G36172
TU45206 lncRNA upstream 457127 37369106 ~ 37372128 (-) True G36184
TU45330 lncRNA upstream 826296 37738275 ~ 37740601 (-) True G36267
AMCG00019675 mRNA downstream 169244 36715937 ~ 36742382 (-) True AMCG00019675
AMCG00019674 mRNA downstream 195890 36645367 ~ 36715736 (-) True AMCG00019674
AMCG00019672 mRNA downstream 671245 36217304 ~ 36240381 (-) True AMCG00019672
AMCG00019673 mRNA downstream 695253 36196898 ~ 36216373 (-) True AMCG00019673
AMCG00019668 mRNA downstream 833471 36069584 ~ 36078155 (-) True AMCG00019668
AMCG00019678 mRNA upstream 160439 37072418 ~ 37089963 (-) True AMCG00019678
AMCG00019679 mRNA upstream 286277 37198256 ~ 37220428 (-) True AMCG00019679
AMCG00019682 mRNA upstream 326910 37238889 ~ 37309104 (-) True AMCG00019682
AMCG00019685 mRNA upstream 466743 37378722 ~ 37384501 (-) True AMCG00019685
AMCG00019687 mRNA upstream 479327 37391306 ~ 37398627 (-) True AMCG00019687
TU44832 other downstream 1856182 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 2389356 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 4678228 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 7226324 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 7265663 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 5632137 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 5732345 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 6386252 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 6665330 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 7984520 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile