RNA id: TU45141


Basic Information

Item Value
RNA id TU45141
length 1606
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G36130
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37238889 ~ 37240494 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttaataacatttttattaacaatTTTTGTATTGACAGTTTTTTAGTAGACTTGACTTGTTTAAGGTGGTAAGGCTAGATTATAAGAGTACCTCTACTCATGATTCATTTACTAGTATATAAACACAGCTGCTGTCCGAAACTTGCTGCTGGTGAAATCACATCATTATGACACACATTATATTGGCAGGACGTGAGACTGGTGATCGATAAGTAAGCAAAATGTTAAAAGCTTCAGCCCTGgatatacttttaattttgttatgtaTTGCTGGgaaactttatatttatttttagaaatgttaaatgtaatgtaaatcaatatcacaatatttgcatttcatggTCTATTTTGTTGATGACAATACAGTTCAATGCCATGAAAGGTGGGTGTCCGGGGGCGGTGCTTATCTTAGCAACTTTGTTCCTCAAAATCTAAATGCAGCTGCTAACTTTGTATTCGATTCCAATCTCATAAGGCACCCTGTTAAACCaagtatttttcattatgtCTAAATAAAATCTGCCATCAGgtaatgtgattttaatgtggatttatttgtggttttatttagtcAAAGCTCAAGTAGAATAATTCACCTACAAAACAAGGGAATAGAATTTAGTTATATAATATTTAGTGTCTTAAGTTCCTTGTAGTTTGTAAGAATTGGGATCTCCAAGTATCTTGTCCATGAACATTTGATGATTATGCTTATTAAATAATATGGTAGATCATGACAGCAGAGAATAATGTAGTATTTAATTCACACATATTTTGGGTATACAttgaacaattacaataaatcatacaaatcaGCCATTCTTAAAGGTTTGTGATCTACAATTATTGttatactgtttttttataGTTCTTACAATTGAATGAACAAATGGCCACCTTGTCTATATCCATGTCTATAGCAGAAGATTTAAAGATACATGTATTAGTGGCAGACATGTTCTGCAGGTTTCACAGACCCTGATTAGTACTAGTCTTGTATTATCCTACCTAAAACCCTACCTTTCtgatctgtgaaaccagcctgTTAGCAGTTACtaagaaattagtttttaacTAGGTGGATTAAGTCAATAATAATTCACCTTTAAAAAGCATACCTTTTTTTCAAAGACCTCAATTATTACACTATAAGGGCTACTCTGGTTAAAATAGCATTGGGTAGTCCATGAATAGTGCTAATTTTGGTCTGTGGAACCAGTGCTTACAGCTGATTTCAAAGACCTCGATTAGCTTTTGTCTTGGATAAACCTATGTAAGAGAATATTGGGTGTTCTAAGATTTGTGTTAATCTGAGTCTAGGAAAACAGCCCATAAAGTTTCATTACAATACATAGAATGCATAGAGGTATAGTTATGCAgtaatttaaagttattttcaaTGATTCTGTAAAAGAGGATATTACCTTAGTTCACACATTTTGTGCAATGTTTTTAAGCTGTGGTTAATGtttctctgaaatgtgtgttaTACTAGCAAAGTAAAACTGAAAGTAAAAGTATAGATTggatcattgttttgttttttgtttttttacatataagaGTTCTAATATAACGCATAAATCAGTTTAACTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45128 lncRNA upstream 33927 37201924 ~ 37204962 (+) False AMCG00019676
TU45113 lncRNA upstream 178245 37060418 ~ 37060644 (+) True G36106
TU45105 lncRNA upstream 292391 36946101 ~ 36946498 (+) True G36098
TU45100 lncRNA upstream 326910 36911541 ~ 36911979 (+) True G36094
TU45094 lncRNA upstream 610819 36627690 ~ 36628070 (+) True G36088
TU45218 lncRNA downstream 147834 37388328 ~ 37389962 (+) True G36189
TU45442 lncRNA downstream 1388714 38629208 ~ 38632178 (+) False AMCG00019708
TU45485 lncRNA downstream 1615345 38855839 ~ 38857856 (+) True G36370
TU45583 lncRNA downstream 1841616 39082110 ~ 39082411 (+) True G36454
TU45597 lncRNA downstream 2017537 39258031 ~ 39258546 (+) True G36464
AMCG00019676 mRNA upstream 25370 37178359 ~ 37213519 (+) True AMCG00019676
AMCG00019677 mRNA upstream 69602 37091023 ~ 37169287 (+) True AMCG00019677
AMCG00019671 mRNA upstream 939376 36292352 ~ 36299513 (+) False AMCG00019671
AMCG00019670 mRNA upstream 1037698 36197051 ~ 36201191 (+) True AMCG00019670
AMCG00019669 mRNA upstream 1048093 36187052 ~ 36190796 (+) True AMCG00019669
AMCG00019680 mRNA downstream 125480 37365974 ~ 37371256 (+) True AMCG00019680
AMCG00019681 mRNA downstream 131885 37372379 ~ 37378679 (+) True AMCG00019681
AMCG00019689 mRNA downstream 159106 37399600 ~ 37406431 (+) True AMCG00019689
AMCG00019691 mRNA downstream 169274 37409768 ~ 37419547 (+) True AMCG00019691
AMCG00019693 mRNA downstream 364019 37604513 ~ 37606380 (+) True AMCG00019693
TU45071 other upstream 939342 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 1175044 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 1175044 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 2387566 34840316 ~ 34851323 (+) True AMCG00019641
TU44379 other upstream 4845913 32330637 ~ 32392976 (+) False AMCG00019609
TU45249 other downstream 273493 37513987 ~ 37516027 (+) True G36212
TU46002 other downstream 5316046 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 5720162 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 6021400 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 6089798 43330292 ~ 43333313 (+) True G36954

Expression Profile