RNA id: TU45206


Basic Information

Item Value
RNA id TU45206
length 2807
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G36184
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37369106 ~ 37372128 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttTTGGTACCAAAGAATCGttgttattgtaaatatatccaaataaaatagattttacttAAAGCATGTTCAATATGGTATCAACTTTTCAGGTTGTGTGTTTCTAGATTACTTTTGTCCAGTGCTGCTACAGTGcatatagaaagtctacacccccttgaactttttttcacattttgttgtgcaaGTGCCTCAGTTTCATGCATTCAAATTTGGATTCCACCCCACACACTTTTTTACACATCATAGTCCATACTGTTAAGGGGGAAAgggttttattgtgaaaaatatatattaaaaacacagaactgaaatataattggaTATGTCTCCACCCTCCCGAGTTAATACtgggtggaagcacctttgacAATTGCAGCTGTGAATCTGTTAGGaaaggtctctaccaactttgcacacctagatttgacaGTATTTTACCAtaaattacaaaactgttcaagttctgtcaagttccttgggaaGAGTTGATGGACAGCAACCCTCAAGTCATGCCACAGATTTGTGATCGGATTTAGGTttgggctctgactgggccactcaaggacttTGCTTTAGGTTGTTGTCATGCTTAAAGGTCATCCAGattggagggacggcctgatctaggcaggctATTGGttgtgccatacaccttccacttaaAAATCATCTCAACTATGCTCCAAGGCTTTTGATATATTTCATACCCATCCCCTAATATGTTCCTTTTAACAACTTTGTCCtagagttcttttgaaagctccttggttctagtggttgagtctttgctttaaaatgtaccaCCCAGCAGAGGAAATCAACACAAACTGCTGAAATTATCctgaaattatgtgaatcacaacaatttaacacaggtggacgCCACTTAATTTGgggtgtgattttgaaggctaTTGCTTAAGTATTGCTAAggtaatttaggattgctaatATAAGGGGGGTGGACACATATCCAAtcacttgtgtttttttaaatgtacaaatgtatatttatttatttatttttactgggAAGGTGTGGGATTGAATGagtagatttgtattttaataatgcattccaGGCTGTAAGGAAGAACTTTTAAGAGACTAGACATGAGAGAACACCAGTGCAAGACTGGGAAAAAACAGTggtttattctgaaatcataaCTCAACTGGTTTGCCTTTGAACATCTGGTTGTTTTACTCCAAATTCTAATTGATACACTTTTTATTCATCATATTGTTCATTTTGCTAAAATAACTTTAGATATCACGTCAAATTATTCTCAACTTTGTTGGCGggattattttttctacacTACTTATTTGGCTAGCAATTCAATCAACATCGTTACACATATTTGTGCCTACCACATGATAATCATTTAAAAGACTATACTCATGTTCTCTATACAACatggaaattaacattttaaggCAAACATAGAAAATTGCTGCTGTATTTTTCCTCTATGTACAAATGAATACCTTTCATCTACTGTCAATCTAGTCTAAGCACGTCCACTGCCGAGGTGAAGAATGGTTGAACTAATTGTGAAACCTCATGTTTTAACATGCCTACATACCAGACAAGCTGCTAGATTcctcaagtgaaaaaaaaaagaggggagGGGAGCAAAACACTTCAGTGCAGACCATTACCTTAACAAAACccatatacatgtgtgtgcataCTAAAGTTAGTTAGCTCTTGTAGCAGTTTCTccactaaagaaaaaaagaagctgGTTTTCCAGACAGTATTCATTGCTTCCCTTGACAAGAAAACAGGGAGGGTGAACATGTAAAAAGGAGGAATAAAAACTGCCTGACTTGATAGCGAACTTTATTTCAAAAGTCtcaatttattacaaaatgtaaaaatccagCTAACCAGGGCTTAAGATTGACAAAGGCTTTTTTCcagagattttgttttccaactttcacattttgtattgaatagTTTCAAACCAGAATATTCACCCCACAATTATTGCAAATTAACTGTCAACCTTAGTTTATTACAGTTGTGCAAATTTGCCAGACTGAACTGGAGGAGGTTCATAAATATGGTAAgtagcattgtttttttgtggttttgttttaaagctaaGGCATGCAACAAGATGTTCTATAGGGTAAAAATCGAAGACAGACATGATATATAATATGAACAAAgatatttgcatatttctacAAATCGCGCCTAGTCGTCTTTGTCCTTTGCTCCGTGCTTTAGGATGCGCGTGAACTCCACATAGTTGAAGTTGCCCTTTTTGTCAATTGGTGCCTCCCTGAAGAGCTCATCCACCTCCTCTTCTGTGAATCTGTCACCCATCGTGGTAAGCAGCTCTCTCAAGTAATCTTCTTGGATGAACCTGTCCCTTCTTCGTCAAAGCAAGCAAAGGCATTTCTAATGACATCTTCGGGGTCTGTGCCATTAAGCTTTTCCCCAAACATGGTTAGAAACATTGTGAAGTTAATTGGGCCAGGGGCTTCCATCATCATAGCATCCAGGTATTCATCTGTTGGGTTCTTTCCTGttcacagaaaaaagaaacaaagaacatCTTTATCACTCTAAAATCATTAGTGCAGCTGCCTACTGTTAATGTATGTATCCTTTCAAAACTGTTAATTAATAGTtaacaaataaaagaacaataGAAACAAAGCAGCTTATTGTGTAGCTACTGATAACATTTAACAACGGTTACTTTTACTTAATAAATGCAACAGTTGATAAAATTACCCTGCCCAGTCTGTATTCATAAGTGAAAACACCCATTTCAAAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45188 lncRNA downstream 42112 37325798 ~ 37326994 (-) True G36172
TU45173 lncRNA downstream 182950 37167433 ~ 37186156 (-) True G36160
TU45103 lncRNA downstream 447300 36921583 ~ 36921806 (-) True G36097
TU45101 lncRNA downstream 457127 36911626 ~ 36911979 (-) True G36095
TU45099 lncRNA downstream 609755 36759030 ~ 36759351 (-) True G36093
TU45330 lncRNA upstream 366147 37738275 ~ 37740601 (-) True G36267
TU45347 lncRNA upstream 601325 37973453 ~ 37973683 (-) True G36284
TU45373 lncRNA upstream 615115 37987243 ~ 38109937 (-) False AMCG00019698
TU45375 lncRNA upstream 615115 37987243 ~ 38110207 (-) True AMCG00019698
TU45374 lncRNA upstream 679085 38051213 ~ 38109937 (-) False AMCG00019698
AMCG00019682 mRNA downstream 60002 37238889 ~ 37309104 (-) True AMCG00019682
AMCG00019679 mRNA downstream 148678 37198256 ~ 37220428 (-) True AMCG00019679
AMCG00019678 mRNA downstream 279143 37072418 ~ 37089963 (-) True AMCG00019678
AMCG00019675 mRNA downstream 626724 36715937 ~ 36742382 (-) True AMCG00019675
AMCG00019674 mRNA downstream 653370 36645367 ~ 36715736 (-) True AMCG00019674
AMCG00019685 mRNA upstream 6594 37378722 ~ 37384501 (-) True AMCG00019685
AMCG00019687 mRNA upstream 19178 37391306 ~ 37398627 (-) True AMCG00019687
AMCG00019683 mRNA upstream 49288 37421416 ~ 37425118 (-) True AMCG00019683
AMCG00019686 mRNA upstream 85965 37458093 ~ 37489142 (-) True AMCG00019686
AMCG00019688 mRNA upstream 119108 37491236 ~ 37492869 (-) True AMCG00019688
TU44832 other downstream 2313662 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 2846836 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5135708 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 7683804 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 7723143 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 5171988 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 5272196 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5926103 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 6205181 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 7524371 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile