RNA id: TU45218



Basic Information


Item Value
RNA id TU45218
length 977
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G36189
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37388328 ~ 37389962 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tcagtACAGTAGTATGTTCATTATTTGTTATCTGTTTTCATGATGTACACAACAACATTGCTACTATAGCAACTCAAACAATAACAAGgctattgaaaacaaatatctgtTAAATGGGAAATGTGTGAGAATAGAACAGTACTATAACAGCTTTTCAATAGAGAAGTACATGTTAATTGAGGTTAGTGCTTTCAGATCAACATATCAGAGATTACAGCAAACACAATGAGTGCAATGAGAGATCTTATTTAGATGACatagtattaataaatacttttatgaCTGAGCGgcgaaagaaaaaaaaacgcatGTATCTTTGTAAAGATGTGTCGGTGGGGCTGCACAACTGTCGATACGACTTACATGTGTAAATGGTGTGGGACCAGATATTGTCAAGCATGCCTCAAAGGTGACTTCACTGGGATAATGAAGTCATCTGACAActgtagaaaatgttttcaGAAGAAATGTCAAGGTCAGAGGGTAGAGTTCAGACCAAGACCACCTGCTGATCCATCAGAGAAGAGaccaaaaagcaaaaaagcaaaatcatcttccaaaaagaaaaaaacaaaaggaaaaaagaaattgGGCAAAAAGAAGAGATAACACTAATGCTGTGATTTCACAGCACGTCACATTTATGTGAACTGGATACAATGATTTGCGATTTTTAGCTTACATTTCATATCAATGTCCTCTGTagaacaatattttgtttcctcttcCATTATCCATTAAAACTTATAGACATATAAAGAGAGGTTACAAATTAGAGGAGGCCACTAGCCCATATTGTTCAACCTCTTTACCCCCTTCATTAGTGAAGGCAGAATGGAACACAGcaagaataatattttaactaatggttttctgttatttttctgtgttgtgtgtaagATTGTATAAGTGATCTTTTACCATTGGTTGCATTGTAAAAAGTAACaatgttacataaataaaattaattacaatta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45141 lncRNA upstream 147834 37238889 ~ 37240494 (+) True G36130
TU45128 lncRNA upstream 183366 37201924 ~ 37204962 (+) False AMCG00019676
TU45113 lncRNA upstream 327684 37060418 ~ 37060644 (+) True G36106
TU45105 lncRNA upstream 441830 36946101 ~ 36946498 (+) True G36098
TU45100 lncRNA upstream 476349 36911541 ~ 36911979 (+) True G36094
TU45442 lncRNA downstream 1239246 38629208 ~ 38632178 (+) False AMCG00019708
TU45485 lncRNA downstream 1465877 38855839 ~ 38857856 (+) True G36370
TU45583 lncRNA downstream 1692148 39082110 ~ 39082411 (+) True G36454
TU45597 lncRNA downstream 1868069 39258031 ~ 39258546 (+) True G36464
TU45633 lncRNA downstream 2002530 39392492 ~ 39430557 (+) True G36497
AMCG00019681 mRNA upstream 9649 37372379 ~ 37378679 (+) True AMCG00019681
AMCG00019680 mRNA upstream 17072 37365974 ~ 37371256 (+) True AMCG00019680
AMCG00019676 mRNA upstream 174809 37178359 ~ 37213519 (+) True AMCG00019676
AMCG00019677 mRNA upstream 219041 37091023 ~ 37169287 (+) True AMCG00019677
AMCG00019671 mRNA upstream 1088815 36292352 ~ 36299513 (+) False AMCG00019671
AMCG00019689 mRNA downstream 9638 37399600 ~ 37406431 (+) True AMCG00019689
AMCG00019691 mRNA downstream 19806 37409768 ~ 37419547 (+) True AMCG00019691
AMCG00019693 mRNA downstream 214551 37604513 ~ 37606380 (+) True AMCG00019693
AMCG00019695 mRNA downstream 216498 37606460 ~ 37607720 (+) True AMCG00019695
AMCG00019694 mRNA downstream 218113 37608075 ~ 37619035 (+) True AMCG00019694
TU45071 other upstream 1088781 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 1324483 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 1324483 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 2537005 34840316 ~ 34851323 (+) True AMCG00019641
TU44379 other upstream 4995352 32330637 ~ 32392976 (+) False AMCG00019609
TU45249 other downstream 124025 37513987 ~ 37516027 (+) True G36212
TU46002 other downstream 5166578 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 5570694 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 5871932 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 5940330 43330292 ~ 43333313 (+) True G36954

Expression Profile