RNA id: TU45330


Basic Information

Item Value
RNA id TU45330
length 2194
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G36267
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37738275 ~ 37740601 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAAcatataatttttattaattgataaaatGGAATGATAGGGTGGAAGTCCTTCCTGACCGCTCTATTCAAACAGCACAACTAAACACGGGAACCGGAATCGGCAACTGAGtggaaataaaatctgaagGTTTACATCTAGTCCAGTTATCGCtcacaattaaatatgtaaaaatagtaATGGCAAAGCCATTTAAAAGCATATCCAGAGCCATTTACAAGAAGATTACGacagctttaaaaaagaaaaaaaaaaaaaaaattgtgcagAAGTTTACATTAAACAGGCGACTCTGAGCAAGGTTACCCCATTTTTTTATACCGCCAAACTGTCTCTTCAATAAAGTCTggatgaaataaatattcactAAACTACAATTGCACTCGTCTTTATGAATTATGTAGGCCAAgcttaacatttaaacaaattgaaattacTTGCCaactttttagtttgtttaacaGTGGAACCTACAGTTCCTTGTTTTACTGAAATTTCAGAAGTGATGCTTTTGTTACTTCTACTAACTAGACAAATCACATTCTACCTATAAagattcatttgttttcaatacttGAAGTGACTTGTCTGTCACACACTTTCAGGagaatatatgtgtatatatacacagacacacccacacatatattatatatacacatgtgtgtgtatacgtgCGTATGTGTGTCACAGACCATTAAACATAATACAGGAAGCATTCATATAGCAATACACAGTCTCTTCTTAATACATTGAAGACTTTAATAACTAATGTAAATTCCTCATCTCCctgcacattgaaataaaatacaacagttCATGAGGCACAATGAGTTTCTGGTAAGCATGATTCTATTAATACCTTGGTCAGTCATTGCTGACTTTCTAAAAACTGGAACATATATTCCACAATGTTATATATCACAAAGGTTAATGTCCCAAACCTTTCAAAGAAGACCACATGCTGGGATTGGTAATAcctacatatatatgcatatatacaccaTCCCTCTAGAAGTGTCCAGACACTCAAAGCAAGCTGTCAAACGTTATGTATTGAGGTTAGGATATAAATGCAGATCCCTTGTATATCAGAAACTTTTTTACAGGTGTTATTTCATGCGGAGCAACAGGACACACACATCTGGAATGAAGTTAGGAAAACGTACCTGAAAGAACGAACTAGGGATTCTTTCAACGCCGCAATCAGAAACTGAAAACTATttcctgaaatgttttgtgacaatatacatattttgatatACATGGACATTTCCTGCAGCTAGATTCGGGATAGCATGTAAGGAACACACATATGCTTCTAGTCGAGCATCTAAAGGTTGTAGCCAATACAagtaacaagaaaaataaaaataaaaactaaacatgtaGGAGCGGCTGGAGTAAACGGATGATGTCTGGACAGTTGGTACAGGGATGTGTATATAaatcacatacatatatatttctttttatattatgCAGGCATGAATTaggaatacatttaatgaatatatatttcatccTACGTGCATTTATTTCCGTAAACTCTGTAAAGTTACAAAACCATCTTATATCTTCAGCCCTGCAGTAGAGATTTGAAGACTGAAATTTTATCCTAATGTAACTACTTTCCTGATCTTGCGATGTTATTGACAATACAGAGATGATATTAACGTTAAACGGTCAAGCTTAAATGGATAGAATCTGAAGAAGGCTGCCTAAGTTTGGTAAGCAGGCAGGGTACTTGTGTGTagattaatgtatatgtatataatatatatatacacatacacacacatatacatacatatcttTGAACAGTATAGACAGAGATGTTAAGTAAGTGCTAGATTCCAAGGATGGCTACAGCAAACCATGTAAGGCGTGCCAGATTCCAAGGCTATGATAATACTGGTAAAGGCAGGATAACACagtatatttacaatacatatgTACTTTACACCTCATGAGGTGAAcctacatgttttttatttttattttgtttttcttgttttaacagCAGCTATTTACATGTTTGTGCCCAGCGTTAGAGAGTGGCACCGTCTTACATCTTGCAGCTGGACAGAAGCCTGATGCTTTACATGAATGATGTGCCAAACGCAAGTCCACTTCTCTGCTAGTCAGACAGGATGTGAACGAATGACATGGGGAACACGCCCTTTCTTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45206 lncRNA downstream 366147 37369106 ~ 37372128 (-) True G36184
TU45188 lncRNA downstream 411281 37325798 ~ 37326994 (-) True G36172
TU45173 lncRNA downstream 552119 37167433 ~ 37186156 (-) True G36160
TU45103 lncRNA downstream 816469 36921583 ~ 36921806 (-) True G36097
TU45101 lncRNA downstream 826296 36911626 ~ 36911979 (-) True G36095
TU45347 lncRNA upstream 232852 37973453 ~ 37973683 (-) True G36284
TU45373 lncRNA upstream 246642 37987243 ~ 38109937 (-) False AMCG00019698
TU45375 lncRNA upstream 246642 37987243 ~ 38110207 (-) True AMCG00019698
TU45374 lncRNA upstream 310612 38051213 ~ 38109937 (-) False AMCG00019698
TU45377 lncRNA upstream 359952 38100553 ~ 38109937 (-) False AMCG00019698
AMCG00019684 mRNA downstream 148214 37565270 ~ 37590061 (-) True AMCG00019684
AMCG00019688 mRNA downstream 245406 37491236 ~ 37492869 (-) True AMCG00019688
AMCG00019686 mRNA downstream 249133 37458093 ~ 37489142 (-) True AMCG00019686
AMCG00019683 mRNA downstream 313157 37421416 ~ 37425118 (-) True AMCG00019683
AMCG00019687 mRNA downstream 339648 37391306 ~ 37398627 (-) True AMCG00019687
AMCG00019692 mRNA upstream 908 37741509 ~ 37745656 (-) True AMCG00019692
AMCG00019698 mRNA upstream 148843 37889444 ~ 38110224 (-) False AMCG00019698
AMCG00019701 mRNA upstream 467281 38207882 ~ 38222789 (-) True AMCG00019701
AMCG00019703 mRNA upstream 522291 38262892 ~ 38263670 (-) True AMCG00019703
AMCG00019702 mRNA upstream 525753 38266354 ~ 38269323 (-) True AMCG00019702
TU44832 other downstream 2682831 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 3216005 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5504877 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 8052973 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 8092312 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 4803515 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 4903723 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5557630 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 5836708 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 7155898 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile