RNA id: TU45347


Basic Information

Item Value
RNA id TU45347
length 231
lncRNA type intronic
GC content 0.45
exon number 1
gene id G36284
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 37973453 ~ 37973683 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttcttggtcaaaggtgtttaaccttgttgtgttgtggttgcaaaaatgcgcccctattctgattggttacggcaGTTAGCTGATGCACTGCGTCAACAtcgttttcctgctccattcacacagacccattgccggaaaattgccggcaattagaCTAGGCTGGCAATAACCCATTCAAACAGACCTTGTTGGCAAAAAAAGTCACCAAAAAGccagcaattgtttcagtg

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45330 lncRNA downstream 232852 37738275 ~ 37740601 (-) True G36267
TU45206 lncRNA downstream 601325 37369106 ~ 37372128 (-) True G36184
TU45188 lncRNA downstream 646459 37325798 ~ 37326994 (-) True G36172
TU45173 lncRNA downstream 787297 37167433 ~ 37186156 (-) True G36160
TU45103 lncRNA downstream 1051647 36921583 ~ 36921806 (-) True G36097
TU45373 lncRNA upstream 13560 37987243 ~ 38109937 (-) False AMCG00019698
TU45375 lncRNA upstream 13560 37987243 ~ 38110207 (-) True AMCG00019698
TU45374 lncRNA upstream 77530 38051213 ~ 38109937 (-) False AMCG00019698
TU45377 lncRNA upstream 126870 38100553 ~ 38109937 (-) False AMCG00019698
TU45372 lncRNA upstream 127082 38100765 ~ 38109937 (-) False AMCG00019698
AMCG00019692 mRNA downstream 227797 37741509 ~ 37745656 (-) True AMCG00019692
AMCG00019684 mRNA downstream 383392 37565270 ~ 37590061 (-) True AMCG00019684
AMCG00019688 mRNA downstream 480584 37491236 ~ 37492869 (-) True AMCG00019688
AMCG00019686 mRNA downstream 484311 37458093 ~ 37489142 (-) True AMCG00019686
AMCG00019683 mRNA downstream 548335 37421416 ~ 37425118 (-) True AMCG00019683
AMCG00019701 mRNA upstream 234199 38207882 ~ 38222789 (-) True AMCG00019701
AMCG00019703 mRNA upstream 289209 38262892 ~ 38263670 (-) True AMCG00019703
AMCG00019702 mRNA upstream 292671 38266354 ~ 38269323 (-) True AMCG00019702
AMCG00019704 mRNA upstream 369289 38342972 ~ 38350616 (-) True AMCG00019704
AMCG00019705 mRNA upstream 652591 38626274 ~ 38626804 (-) True AMCG00019705
TU44832 other downstream 2918009 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 3451183 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 5740055 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 8288151 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 8327490 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 4570433 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 4670641 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 5324548 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 5603626 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 6922816 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile