RNA id: TU45429


Basic Information

Item Value
RNA id TU45429
length 286
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G36349
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 38454024 ~ 38454309 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggaaataagtatttgatcccctatcaatcagaaagatttctggctcccaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagccagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggttgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45387 lncRNA downstream 335090 38118720 ~ 38118934 (-) True G36312
TU45375 lncRNA downstream 343817 37987243 ~ 38110207 (-) True AMCG00019698
TU45373 lncRNA downstream 344087 37987243 ~ 38109937 (-) False AMCG00019698
TU45374 lncRNA downstream 344087 38051213 ~ 38109937 (-) False AMCG00019698
TU45377 lncRNA downstream 344087 38100553 ~ 38109937 (-) False AMCG00019698
TU45501 lncRNA upstream 164532 38618841 ~ 38619657 (-) True G36386
TU45585 lncRNA upstream 624194 39078503 ~ 39081979 (-) True G36456
TU45604 lncRNA upstream 791483 39245792 ~ 39293373 (-) True G36470
TU45630 lncRNA upstream 925499 39379808 ~ 39380708 (-) True G36495
TU45651 lncRNA upstream 962693 39417002 ~ 39417956 (-) False AMCG00019724
AMCG00019704 mRNA downstream 103408 38342972 ~ 38350616 (-) True AMCG00019704
AMCG00019702 mRNA downstream 184701 38266354 ~ 38269323 (-) True AMCG00019702
AMCG00019703 mRNA downstream 190354 38262892 ~ 38263670 (-) True AMCG00019703
AMCG00019701 mRNA downstream 231235 38207882 ~ 38222789 (-) True AMCG00019701
AMCG00019698 mRNA downstream 343800 37889444 ~ 38110224 (-) False AMCG00019698
AMCG00019705 mRNA upstream 171965 38626274 ~ 38626804 (-) True AMCG00019705
AMCG00019706 mRNA upstream 313852 38768161 ~ 38775844 (-) True AMCG00019706
AMCG00019707 mRNA upstream 362190 38816499 ~ 38819280 (-) True AMCG00019707
AMCG00019712 mRNA upstream 387833 38842142 ~ 38865670 (-) True AMCG00019712
AMCG00019711 mRNA upstream 430697 38885006 ~ 38893548 (-) True AMCG00019711
TU44832 other downstream 3398580 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 3931754 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 6220626 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 8768722 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 8808061 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 4089807 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 4190015 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 4843922 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 5123000 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 6442190 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile