RNA id: TU45585


Basic Information

Item Value
RNA id TU45585
length 3477
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G36456
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39078503 ~ 39081979 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAATCTGTGCACAGATGAAAGATGTTTGTACATTCCAGTAATATTCTGATGGCATCCCCCcctttttaagaaatatacattCAGAAGACCTGTATTTTTGCTGAACATTTTTTTACCTCTCACAGTGCAAATGAGCGGCTGATGTATTATGTAAACTGAGTGCAGTCACAACAAGAAAGAGACTGTCTGTTGTCTCCggaatgaaaaacaatggaaaCCCATGAAGTGGTACCAAGAACAGGAAAGAAATGCAAAGGACCGGAGGACTGTGTTCAGACACGCTGAAATATCCTGGTTTTCAGTCTTGTcttaaaccacacacacacacaaactgcgGATCTAAAAGTGCAGCAGGTTCACGTATCTGTAATCGAATGACCATATGTACAATGCACAAATACCAATAACATTAATAAGAATATGAAGACCTGGTACACAACTCCACCGCTGCAAAGACTTGAATGTTCTCAGTTGGTtctgaacacattttattctCAGGCCTTGAAACCCTCCCTCTGTGGAAACTATAAAAGCCGTGCGTGAAAGCCCTGTGTGTTGCTCGTGCTTGTGTAAAAGGCATTGTTCCTATAGAATTTATACAGGTCTACGAGGGGTATTTAATTGTGGAAAATCCATAGAGGGAAGAGAAAAACCAAATTCATTACAAAATCTGTGTTTCAAgcagaaatctgtttttatcATGAGTGACAAAAGCATTTCCTCAGTCATTTCACTCTTCAGCTGACGTTTAGAGTACAGTGAAGGCAGTGAGGTCTCAGATTAGGTtatattcagtttgtgtgtttttcagctttttcctGCACTGCCTCCAGCATCAATATTGTGATCCAATATCACACAGTAATAGTTTATGTGCGCTGTTCTATATTCTATGAGGCCTGGGATTTCTAAATAATTTTTGAACAAGTACATCTGCTAGAGGAGTGTCTGAAGATGAGAGCACatcgtttttattttccttccttcaTTAATGGCATAGTCAGTGTTTTGATATGCTTCATACTCTGATAAGCTGTCCACATTTtggacaacaaaacaaaaaaacactgctttgtCTCTCTAGGTCCTTTCACAGCCACATCCAAACTGAGAATGTATTCTCACAAAACCCCAGAGACTGAACATCAGCATTAGCTAGCACAGACTAGTGCATTTTACTGTGAATGTCCTCTTTAAAACAGAAAGTCCGTCCAACACATTATGATTATTGCAGCATGTGAATGTAATAGATTTATCTGtgatttttgtatgtgtatgtgatgTATGTGTGTTACAATTCTTAAGTCTcatatgttttgttaattgttcTTATTCTTACGATAGACCAAAGGAGATGTTCGATAAGagttaaacagaaaaaaatgtttatctcTATTATATCATTGTTAAGGGCCTTATTACTTATTAACCTTAACTTTTCCGTACTATAGTACATGACATTTCACTGTTATCAGTCATGATCTGttcttagaaaaaaataaacatgaaaagaacAACTTACCAATAATCATGGTGTTTATCTTCAACTGACATTTGGacctgaaaggaaaatatatatatatatcgtcataCCAGTAATGAGgatgacatttaaatgaaagtgaGTGGGAATgttattctgatttatttttgattgcaCCGTGTCCTGGGTCTCAAGTGACATAAATTGATCCAAAAATTCTGATATATGACATAACTGATTCACAGTGCTACAGTCAATGTTAACATTGAAAAGTCACTGAGGTTTTTGTATCGCTGTATATTTATCAATTTGGAACAACAAAATGACCAGTGTTTTTCACACCTCTTTGCTCAAGAGGAAAATTTGCTCTACCTTTGTGGaaattattgttctgttttcatttgttattttataagtACCAAGAAACCTAAAGGTAgggaaattaattgtttaactgtttatttacGTATTTCTGAGCTCAGAAGTAGTAAGCTTGGCAAGTCATCCTGTGCTGTTGCCTTCTCGTAAGATAGagttttacatatataaatccTTTTTGTAACAGACAGTGGTTGACAATTCTTTATCAAGACAATCAGAAATGTGCTTCTGCATAACATGTAATCAAGAATTCAAGctcttaaataaaaaaggtcaaGGTTTAAACTAGGAAGGTGCATTTGCTAGATGCAGTTGCTTCTATCTCTTCTCTTATggattgttttcctctttttatattttagtctAAGCAGGCGATGAATAAGGTGTTTCCACCTTAGACAAAGGAAACTGAactcattgatatccagttagacTTAGAGCGgatcattaatcaaattcagccaacttaaatgtaacaaatcaaaaacagtaacttaagaataataataaatttaatAGGAtatccaaatatgcactgaatttaataacaacacttaagtaaaataaataaacaaatcatcaaATTTTTGCactgtaagcactgtattttcaaaatataaaaacaagcttCCTTATGGAAAGGATATGGCggctacacagcactgcagtaggtgctacacacctgttttggaCACACGGCAGCATTAATGTACATCATATGATTATGTTTGAGTCTGCGATGacctatatacatatagataagTAAGGGTATTGGACAGAGATGTGTACTACTATATTACCGAGGAGGTCTGCATTCGGGATGTGTCCAGACTAcagtgcactgcacagtgtggactgatgccagatgtgatttctaatgatatttatatatgtgtgtatatgtgtgtgtatgaataacAGAACATGAAACATGGCACtcgcctctgtccagcacatTGCCTCATTCATtcacctgcagagtcctgttcctttaatgccgtggcttattaacatatggtaatgactcggtaattggaaacatgagatgcaaatgtattccgggctgacattaaacatgtgcATAGCGCTATCGAATTTGGATTGCATGAAAGACTTaaattagactgaatatacTAGTTTTGCGCGATATTTGTGTGGCGCATTCCTCCAATAACTGCGCAAAGCTGTGTTCTACAGAGGGGATAATAGCGCACTGTGGAGTGGCGCAGGCGGGTTTGCGAGACACGAATAAAATGCTATATTTCAATGTCGCGCAAATATGTGtgccatgtttgaatatctctccttTTATGGCTAAGCCACATATTTGCTGCGCGGCACACATTTTGCGTGGAAATTTTGCAAAGTTTGAATATCAGGCcctatatgatatatatataatagtatataATGATCTATTATGATCATTCTTATCAACTACTCCATACAAACGAGGTTGCTTTTGATCAAATATCTGATTCACTGCAGTTATTTTGCTGGTATGCTGGTATTTTCTAAAGCGTATGACACTTGTTTGTTCATTGGATATTATGGTTTTATATTGTGCAATATGTAGTAAAATGCTATGTATAATGAATGTTTAAGTATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45501 lncRNA downstream 458846 38618841 ~ 38619657 (-) True G36386
TU45429 lncRNA downstream 624194 38454024 ~ 38454309 (-) True G36349
TU45387 lncRNA downstream 959569 38118720 ~ 38118934 (-) True G36312
TU45374 lncRNA downstream 968566 38051213 ~ 38109937 (-) False AMCG00019698
TU45604 lncRNA upstream 163813 39245792 ~ 39293373 (-) True G36470
TU45630 lncRNA upstream 297829 39379808 ~ 39380708 (-) True G36495
TU45651 lncRNA upstream 335023 39417002 ~ 39417956 (-) False AMCG00019724
TU45676 lncRNA upstream 624623 39706602 ~ 39709528 (-) True G36534
TU45677 lncRNA upstream 625091 39707070 ~ 39709528 (-) False G36534
AMCG00019713 mRNA downstream 89372 38980110 ~ 38989131 (-) True AMCG00019713
AMCG00019714 mRNA downstream 125490 38929405 ~ 38953013 (-) True AMCG00019714
AMCG00019715 mRNA downstream 171317 38902803 ~ 38907186 (-) True AMCG00019715
AMCG00019711 mRNA downstream 184955 38885006 ~ 38893548 (-) True AMCG00019711
AMCG00019712 mRNA downstream 212833 38842142 ~ 38865670 (-) True AMCG00019712
AMCG00019719 mRNA upstream 123 39082102 ~ 39097112 (-) True AMCG00019719
AMCG00019720 mRNA upstream 113515 39195494 ~ 39195833 (-) True AMCG00019720
AMCG00019721 mRNA upstream 281985 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019724 mRNA upstream 334908 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019725 mRNA upstream 629008 39710987 ~ 39728290 (-) True AMCG00019725
TU44832 other downstream 4023059 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 4556233 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 6845105 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 9393201 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 9432540 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 3462137 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 3562345 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 4216252 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 4495330 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 5814520 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile