RNA id: TU45630


Basic Information

Item Value
RNA id TU45630
length 901
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G36495
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39379808 ~ 39380708 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAaaacactactggtcaaaagtttttgaacacccccatttttccagtttaagCAGTTTGAGTCCAGTGAATatcctgaaatggtacaaaggtaagcggtaaagtgccagaggttaaaaaaagaaatttaagttaccaaaaactgaaaaataatgtacatttcagagttatgctgtgttactacaccctcttaagcattatttggcagtgttacacgcagctcctgtgcacagaagttacactgtattcctacaatgcacacatcgtttgaaagcttattctcttggctaccagcacgtctcattctcaaacacatccaatttacagtttctgtgtcgcctgctgtcattcagagcccggcgGGGGTTAAATGCGCAGTCTGCTCCCGGTGGGGGGgttcattcagacggtcacagatcactccgTTTCAAACAGATTTCTTAGAAAATAGGCatattttgttcagaacaacctaacgattaattcagtatatattatttgatgttctttcaaacacagagaagctcagatccaattatgtaaaatcattgtgtacaCTCAGACCAAAGGGCATAAATGCGGTTAGAATGTGGTTAGAATGCGGTTAGAAAGCTGaatctcagctttcatgggataccaaacacttggcaaacaacacaacagtgaagagtacacatgggattaaagagaagcacacggatttggtgcccatttacgggtaccagaggggtttgtcagcttaaggtgTAAGGTCAGCAAAATGATTGCAGGATTTCTTTATCtccagttgtttatttgttctatgctttaatttcagaaacatttaactgtgtaaatttcaataaaaactggaaaaatttaggTGTTCTGAAACTTTTGAGCGGTAAtgtatactcacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45604 lncRNA downstream 86435 39245792 ~ 39293373 (-) True G36470
TU45585 lncRNA downstream 297829 39078503 ~ 39081979 (-) True G36456
TU45501 lncRNA downstream 760151 38618841 ~ 38619657 (-) True G36386
TU45429 lncRNA downstream 925499 38454024 ~ 38454309 (-) True G36349
TU45387 lncRNA downstream 1260874 38118720 ~ 38118934 (-) True G36312
TU45651 lncRNA upstream 36294 39417002 ~ 39417956 (-) False AMCG00019724
TU45676 lncRNA upstream 325894 39706602 ~ 39709528 (-) True G36534
TU45677 lncRNA upstream 326362 39707070 ~ 39709528 (-) False G36534
TU45684 lncRNA upstream 431602 39812310 ~ 39813571 (-) True G36539
TU45705 lncRNA upstream 517179 39897887 ~ 39901757 (-) True G36557
AMCG00019721 mRNA downstream 9611 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019720 mRNA downstream 183975 39195494 ~ 39195833 (-) True AMCG00019720
AMCG00019719 mRNA downstream 282696 39082102 ~ 39097112 (-) True AMCG00019719
AMCG00019713 mRNA downstream 390677 38980110 ~ 38989131 (-) True AMCG00019713
AMCG00019714 mRNA downstream 426795 38929405 ~ 38953013 (-) True AMCG00019714
AMCG00019724 mRNA upstream 36179 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019725 mRNA upstream 330279 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019727 mRNA upstream 352681 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019726 mRNA upstream 445647 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019731 mRNA upstream 589467 39970175 ~ 40044291 (-) True AMCG00019731
TU44832 other downstream 4324364 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 4857538 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 7146410 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 9694506 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 9733845 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 3163408 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 3263616 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 3917523 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 4196601 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 5515791 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile