RNA id: TU45657


Basic Information

Item Value
RNA id TU45657
length 2475
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G36516
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39707066 ~ 39709540 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGTGCctaaatttttatttttcagtaagctacatttttttttttttcaaattagaCAGTTTTACATAATGACACAAAAAGAAACTTAAATTATCAATAGTTTACATGTATGCTTGATTCCAGTCGTAATGGAAGagtaagacaaaaacaaaagccctCATAAGGAAACGTCCATTAACAACTTAACTGCGGttagctttttttctttctttttaaaatgttatcatcGATTGTCCACTGCTGTTAGTGTAATGTGTTAtgatatgaaaagaaaaatattaaccACAGGGAGTTGAAAGAGAAAATGGTATGCATCAATACAGTCAActggtgcatttgttttttgttgtttacactGCATTACTCACAAACATGGTCGATTTACAACAAGCTGCAACCCTCCTAACACACACCATTGTGTCCACTCAACACATGGGGAGATGTTGAAGCAGCACgtggggagggaaagggaggtTCAGGTGTGCAAGGAGGTGGGGCTGGGTGGACCCTTGATATGAAGTTCTAGCTAACAAGAGTAAGAgatcaaaacatacaaatggaacaattaaaaaaaaaaaaaaaactacttaaaacacAAACCTTTTGCATTTGGGATTATACTTACTCTGCAGTGGCTGGTAGAGGTGTAAAGCTCTTGCCCCTTTTACCTAAGCAATCTTTGCTCCCTTTAACAgcaaaaagtattttgtgtcCATACAATAtctcaaatgttttgtttcgaTTTATTTAGTGTGGGATCCTTTCTTTGAATTCTGTTATCACCATTGCAGATACAAAAGCAAACCCCAAGAGACTCAcgcacaaaacacacaccagtAAGGAGCCAAGCttgattaataacaaaaaaacaaacatcatacTTAAATGTACTGTGACAAATGCAAAAGCTACACTTTTTAGCACAACTGACATCGGCATAACAgcactgggggaaaaaaacacgaCCTAGGCTTGGTAGACCAACTCAAGTGTGCCAGTTGTCCGGTACTGAGGGCACATCTGTCCCGGGTTGCAGCTGTTGATTTGCTACACATTTCAGCAGCTCTACTGATTACCCACAGTTGATTGGGGTGGGGAGAATGGGGGGGTAAGAGACTGAAGGaggagtggggaaaaaataaaaaataaaaaatggcacAGCTCAGTTAATTTGCCACATTGACTGCAGTCCAcacatataattaattacacaatacaagacaaacagtatgcatttatagatttgttttctttaactgTAGCAGACAACCCCTTTCTGTTGGTAATGATCAGTGAAATTATGTAGCTCCACTTTCAAACTGAGATCTGGACTCATCTAAGTGTCGTTGCGTCTCCAAAGAtcactattttttatttttttggaggggAGGCGGTGGAGTGGTGGCTTGGATACAAGGACCAATGACATATACTAATGAGTGTCCTATAAAAGGTAAAAAGGTTTTGCACAGTAAAGCTATTAAAACTCCTGCTGGGAGTGTGTTGGGCTGTCTATTGTAATACTCGAGTATCCTGTGCTTCAAAACTATGTGCTTCGTTGGACCATTTAGTGGTGTTAAATTGATTTCACTTAAGTATCAATTCAGCACAGCACCTTGCAGCAacggttttaaattaatttggattACAAAAATTTCAAAAGTAATGAGAAGTTCTACCACTCCCTCCcgcttaatttttttctttccacacagTGAAAGGGGTTATCGTGTTTCTTTGACACTTAACCATTACGATAATCCAGACCTTGTGCACTGACAATACGAAAATGGAATGAGACTatgacatttaattacaatCATACTTCCTTCTCCCCATACTGCTATGAGAAGGCACACTCAATTCAGCaaaccaaaaaattaaaataaaacctaaaaggaaaaaaacaaacaaaaaaatcaaaccacaacatttagttttaatctACATCCAGCTCAACAGCAACATTAATATTTCAACaagatcaatatatatattttttttaatcattttaaggTACCTCttatattttctgattatttacAACTGTACAAGCAAAGCACACACTTCCAAGTGcacatatttaatacagtattgaCTATCTGCATTTACAGGATTTATCCCACTCCCCCCAACaaattggaaaaagaaaaaaaaaaaaatcataagatCTTTCTTATATTACAAAACAAGTTTGCTGCTAGtcttgtacttttttttttttttttcttactagTAAGACTAGTGACTGTAGGTATAATAAGAGTAATCCTATGTGCCACTCTTGGTAACCCTTTGGGGACTTGAAAAGCAATAAACACTAGGctgttttatataaaagttAAGGCAAAGTCATtttcaagtttaaataaaattcaaGTTTTCAAACACTGGatggaaatatttatattatatatatacaaacacgcatgtattatacatataggtgtgcgtgtgtgtatatatgtatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45633 lncRNA upstream 276509 39392492 ~ 39430557 (+) True G36497
TU45597 lncRNA upstream 448520 39258031 ~ 39258546 (+) True G36464
TU45583 lncRNA upstream 624655 39082110 ~ 39082411 (+) True G36454
TU45485 lncRNA upstream 849210 38855839 ~ 38857856 (+) True G36370
TU45442 lncRNA upstream 1074888 38629208 ~ 38632178 (+) False AMCG00019708
TU45739 lncRNA downstream 638664 40348204 ~ 40348476 (+) True G36585
TU45740 lncRNA downstream 659692 40369232 ~ 40369540 (+) True G36586
TU45742 lncRNA downstream 671683 40381223 ~ 40381424 (+) True G36588
TU45751 lncRNA downstream 744643 40454183 ~ 40454484 (+) True G36597
TU45752 lncRNA downstream 780376 40489916 ~ 40490115 (+) True G36598
AMCG00019722 mRNA upstream 292181 39382147 ~ 39414885 (+) True AMCG00019722
AMCG00019723 mRNA upstream 378225 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019718 mRNA upstream 642993 39033581 ~ 39064073 (+) True AMCG00019718
AMCG00019717 mRNA upstream 866686 38838764 ~ 38840380 (+) True AMCG00019717
AMCG00019710 mRNA upstream 874593 38825792 ~ 38832473 (+) True AMCG00019710
AMCG00019728 mRNA downstream 102537 39812077 ~ 39830831 (+) True AMCG00019728
AMCG00019730 mRNA downstream 145645 39855185 ~ 39889023 (+) True AMCG00019730
AMCG00019729 mRNA downstream 204442 39913982 ~ 39919021 (+) True AMCG00019729
AMCG00019733 mRNA downstream 981976 40691516 ~ 40702922 (+) True AMCG00019733
AMCG00019732 mRNA downstream 1008943 40718483 ~ 40729666 (+) True AMCG00019732
TU45249 other upstream 2191039 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 3407519 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 3643221 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 3643221 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 4855743 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 2847000 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 3251116 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 3552354 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 3620752 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 4343534 44053074 ~ 44056603 (+) True G37105

Expression Profile