RNA id: TU45676


Basic Information

Item Value
RNA id TU45676
length 2927
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G36534
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39706602 ~ 39709528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atacacacacgcacacctatatgtataatacatgcgtgtttgtatatatataatataaatatttccatCCAGTGTTTGAAAACttgaattttatttaaacttgaaaATGACTTTGCCTTaacttttatataaaacagCCTAGTGTTTATTGCTTTTCAAGTCCCCAAAGGGTTACCAAGAGTGGCACATAGGATTACTCTTATTATACCTACAGTCACTAGTCTTActagtaagaaaaaaaaaaaaaaaagtacaagaCTAGCAGCAAACTTGTTTTGTAATATAAGAAAGatcttatgatttttttttttttctttttccaatttGTTGGGGGGAGTGGGATAAATCCTGTAAATGCAGATAGtcaatactgtattaaatatgtgCACTTGGAAGTGTGTGCTTTGCTTGTACAGTTgtaaataatcagaaaatataaGAGGTAccttaaaatgattaaaaaaaatatatatattgatcttGTTGAAATATTAATGTTGCTGTTGAGCTGGATGTagattaaaactaaatgttgtggtttgatttttttgtttgtttttttccttttaggttttattttaattttttggtttGCTGAATTGAGTGTGCCTTCTCATAGCAGTATGGGGAGAAGGAAGTATGattgtaattaaatgtcatAGTCTCATTCCATTTTCGTATTGTCAGTGCACAAGGTCTGGATTATCGTAATGGTTAAGTGTCAAAGAAACACGATAACCCCTTTCActgtgtggaaagaaaaaaattaagcgGGAGGGAGTGGTAGAACTTCTCATTACTTTTGAAATTTTTGTaatccaaattaatttaaaaccgtTGCTGCAAGGTGCTGTGCTGAATTGATACTTAAGTGAAATCAATTTAACACCACTAAATGGTCCAACGAAGCACATAGTTTTGAAGCACAGGATACTCGAGTATTACAATAGACAGCCCAACACACTCCCAGCAGGAGTTTTAATAGCTTTACTGTGCAAAACCTTTTTACCTTTTATAGGACACTCATTAGTATATGTCATTGGTCCTTGTATCCAAGCCACCACTCCACCGCCTcccctccaaaaaaataaaaaatagtgaTCTTTGGAGACGCAACGACACTTAGATGAGTCCAGATCTCAGTTTGAAAGTGGAGCTACATAATTTCACTGATCATTACCAACAGAAAGGGGTTGTCTGCTAcagttaaagaaaacaaatctataaatgcatactgtttgtcttgtattgtgtaattaattatatgtgTGGACTGCAGTCAATGTGGCAAATTAACTGAGCTgtgccattttttattttttattttttccccactcctCCTTCAGTCTCTTACCCCCCCATTCTCCCCACCCCAATCAACTGTGGGTAATCAGTAGAGCTGCTGAAATGTGTAGCAAATCAACAGCTGCAACCCGGGACAGATGTGCCCTCAGTACCGGACAACTGGCACACTTGAGTTGGTCTACCAAGCCTAGGtcgtgtttttttcccccagtgcTGTTATGCCGATGTCAGTTGTGCTAAAAAGTGTAGCTTTTGCATTTGTCACAGTACATTTAAgtatgatgtttgtttttttgttattaatcaaGCTTGGCTCCTTactggtgtgtgttttgtgcgTGAGTCTCTTGGGGTTTGCTTTTGTATCTGCAATGGTGATAACAGAATTCAAAGAAAGGATCCCACACTAAATAAAtcgaaacaaaacatttgagaTATTGTATGgacacaaaatactttttgcTGTTAAAGGGAGCAAAGATTGCTTAGGTAAAAGGGGCAAGAGCTTTACACCTCTACCAGCCACTGCAGAGTAAGTATAATCCCAAATGCAAAAGGTTTgtgttttaagtagttttttttttttttttaattgttccatttgtatgttttgatcTCTTACTCTTGTTAGCTAGAACTTCATATCAAGGGTCCACCCAGCCCCACCTCCTTGCACACCTGAacctccctttccctccccacGTGCTGCTTCAACATCTCCCCATGTGTTGAGTGGACACAATGGTGTGTGTTAGGAGGGTTGCAGCTTGTTGTAAATCGACCATGTTTGTGAGTAATGCagtgtaaacaacaaaaaacaaatgcaccagTTGACTGTATTGATGCATACCATTTTCTCTTTCAACTCCCTGTggttaatatttttcttttcatatcaTAACACATTACACTAACAGCAGTGGACAATCgatgataacattttaaaaagaaagaaaaaaagctaaCCGCAGTTAAGTTGTTAATGGACGTTTCCTTATGagggcttttgtttttgtcttactCTTCCATTACGACTGGAATCAAGCATACATGTAAACTATTGATAATTTAAGTTTCTTTTTGTGTCATTATGTAAAACTGtctaatttgaaaaaaaaaaaaatgtagcttactgaaaaataaaaatttagGCACTGTTAAAGTATTCTCCtgtgtatttctcaaaatgatGTATGGTAGCCTGTAGTTAGCACTGCAGTTCTACCAGATACATGCTCTTTACTTTTCCTTGAAGTTtaggtatttttctttttaattttgtgtgtatattgtatgtgtaGTAAGGCCTGATCGTGTGCATTTATGCCCAACGATATCTGGTCATAGCATATGAACATTTTGAAGAACCTCATTGCTTCATAATCAGACCAAATATGAGCCTATGTAAAACAATAACCCAAACGATCAATTTTGAAGATGTTACTATGCTCATGTGAAAGTATCGTAGGTATGTGTTCAAATTATAAGAATCTTGGGACAGATGTGgcaattgtcattttttatggCAAAAAGACTTAAGTTTCCaaaatgggttttattttccaaaatggctattcatgtttttttcccccctaataTAAAGTTTGACATGAGAGTTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45651 lncRNA downstream 288646 39417002 ~ 39417956 (-) False AMCG00019724
TU45630 lncRNA downstream 325894 39379808 ~ 39380708 (-) True G36495
TU45604 lncRNA downstream 413229 39245792 ~ 39293373 (-) True G36470
TU45585 lncRNA downstream 624623 39078503 ~ 39081979 (-) True G36456
TU45501 lncRNA downstream 1086945 38618841 ~ 38619657 (-) True G36386
TU45684 lncRNA upstream 102782 39812310 ~ 39813571 (-) True G36539
TU45705 lncRNA upstream 188359 39897887 ~ 39901757 (-) True G36557
TU45719 lncRNA upstream 263228 39972756 ~ 40123987 (-) False AMCG00019731
TU45727 lncRNA upstream 480292 40189820 ~ 40191361 (-) True G36576
TU45736 lncRNA upstream 625615 40335143 ~ 40335556 (-) True G36582
AMCG00019724 mRNA downstream 201040 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019721 mRNA downstream 336405 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019720 mRNA downstream 510769 39195494 ~ 39195833 (-) True AMCG00019720
AMCG00019719 mRNA downstream 609490 39082102 ~ 39097112 (-) True AMCG00019719
AMCG00019713 mRNA downstream 717471 38980110 ~ 38989131 (-) True AMCG00019713
AMCG00019725 mRNA upstream 1459 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019727 mRNA upstream 23861 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019726 mRNA upstream 116827 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019731 mRNA upstream 260647 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019734 mRNA upstream 1020165 40729693 ~ 40766188 (-) True AMCG00019734
TU44832 other downstream 4651158 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 5184332 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 7473204 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 10021300 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 10060639 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 2834588 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 2934796 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 3588703 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 3867781 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 5186971 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile