RNA id: TU45684


Basic Information

Item Value
RNA id TU45684
length 277
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G36539
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39812310 ~ 39813571 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAAATCTGCATAAAAAGGATGGATATCATCCAGTTTGGGGAAGTCGGTGAGAATCTGGGAGAGTCTGTCATGATAGTTCTGCTGTGTGTATTTCACCTTTCTCATATAGAAATGGCGAATGCGATGGATTTGATAGTGCTTATGGATAACCGTGGGAGTCTTCCTTTGCGTCTTGGACAAGGTAATATCTATAAATTCCTTTGCGGTGGGAACCACCATAATCTTCTTGAAATTGTACAGAGCCATCTTTCCCTTCCACGCTGCTCGCTTCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45676 lncRNA downstream 102782 39706602 ~ 39709528 (-) True G36534
TU45677 lncRNA downstream 102782 39707070 ~ 39709528 (-) False G36534
TU45651 lncRNA downstream 394354 39417002 ~ 39417956 (-) False AMCG00019724
TU45630 lncRNA downstream 431602 39379808 ~ 39380708 (-) True G36495
TU45604 lncRNA downstream 518937 39245792 ~ 39293373 (-) True G36470
TU45705 lncRNA upstream 84316 39897887 ~ 39901757 (-) True G36557
TU45719 lncRNA upstream 159185 39972756 ~ 40123987 (-) False AMCG00019731
TU45727 lncRNA upstream 376249 40189820 ~ 40191361 (-) True G36576
TU45736 lncRNA upstream 521572 40335143 ~ 40335556 (-) True G36582
TU45744 lncRNA upstream 590680 40404251 ~ 40404583 (-) True G36590
AMCG00019727 mRNA downstream 72067 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019725 mRNA downstream 84020 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019724 mRNA downstream 306748 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019721 mRNA downstream 442113 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019720 mRNA downstream 616477 39195494 ~ 39195833 (-) True AMCG00019720
AMCG00019726 mRNA upstream 12784 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019731 mRNA upstream 156604 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019734 mRNA upstream 916122 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019738 mRNA upstream 1734347 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019739 mRNA upstream 1760705 41574276 ~ 41576305 (-) True AMCG00019739
TU44832 other downstream 4756866 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 5290040 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 7578912 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 10127008 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 10166347 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 2730545 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 2830753 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 3484660 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 3763738 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 5082928 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile