RNA id: TU45705


Basic Information

Item Value
RNA id TU45705
length 3813
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G36557
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39897887 ~ 39901757 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATAAATGACagttagatttatttatttattattcttccAGTCTATGATTTGGCCAagctttattgatttaaatacttACAAATTACTCATTTCCTCTACAACATGAACTTCTGAGCGTTCTCTCCAATCTAAAGGATAATGTTTTGAGGAAGACAAGACAGttgaataaatgaaacaaaaatcagCATATTTTATTAGGTTTTACAAGCTCGTTTCTTCCTGATGCTACTACTTTCACACTAAAATGTGCCGTTTGCAAAAGCAGATAATACAATGGTGTTCAGTGAAAGTACCCACATACTGTTTTTGCTATTCTCAACAGCAAAGTTTCCCCGTTTTCTATCTTTTTCATCTCCgttggacatttatttatttaaatttttgaaTGATTGTATGCGTTTCAGGAGTCTGCATGTCCGTCTTGAGTACCAAGTCATTTTGAAAACCTGTTGTCTGGTAAATTTACGATATAACAAAACCACACTCGAAACTAAACATTCCACATGTGGCCAGcagttttaaaagtataaaGCCAATTAACCATCAGGTGTCATTTAAGGATGAAATGGATCTTTTCTCAGGGTAAAAGCATCACCTTAGTGCAGACTCAAGAAAACAATCAGGGGCTTTAACTAGATGGAGAGAACTGGAATAATGTGGCTTGTGAGAAGAGAGGTTTAAAATCACACCACAGGGAAAACTAAATAGTGCATctcacaaaaaataagaaaagatagAAAAGAGAATGATATTTGGCAGTGGGTAGCCACATATTATTCTGATCGgcaaaaaaaagatacattttactcATAAGCAGTTTACTTCAATGTTTCTTCCACTAGGACAGTGTTTTTACAAGTAAATTACAAGAAGGCAAGTGATGTGGTAACTTTCCAAAACACTTCTGTACAAAAgcagtggaaaacaaaaaaccaaagaaatctgcaaaaaaaaaaaaggcaaaaattacctatacattaatttaactttcCTCTAAAAAAGttctaaagaaagaaatacattagaAAAGAGCATTTAAACATGtggtaaaatactgtttaatatGGTGAAGACAATGCATGACCTTAGCTATTGGAGTAAACAAAGCTATCCCTTGACAAATACCTGGAATTTCAAAATCTGCTGACCACAAATATCAGCCACCCAGTGATGAtcactagtttcagaccagtcatTTGAGAAGGAATACAGCAAACAGTTTAATGTCCAGAAATGTGTCAACTTACATATATTAAAAGACTGAACCAAGTAATTAGCAGGGCTACACATGCATGAACCTTGAAGAAATcccaacagtttatttttttaattaagagtgGCGgtggaatacatttaattcaagtAAAGCAGTACAATTATTAACTCAAGTGAAAATTTTATTACGTTTGAGTTTGTTAAAGCTAGattagaatgcatttttttagcTTCTAAAGTGAGACATTGCATAATGGTTTTGATCTGGTTTGTAAAGGAACAGTTTCCATATACTTAAGATTGATTGTAAGAAAGTAGAGTCCTGAAGTATCAGTGAGGCAATTACTTTCACTGTTGGGTGCACTGGTGATACTAAAGGAGATCAAAACGTCACATTAAACTAGCCTGTctaacacatacataaaaaaatcccCAATGTGCCTGAATATCTGTGAcataaaaagtgaaattaactAGAAGTAACAGATCATTTAAAAGTAAGAACTGCAAAACAAAGCTTTCGGCAAGGCATACTAACAGTAGTGATAATCACAGATTAACCCCCATAAGAGTTTATGCCAGCATTTGctttcaatgaaaacaaaccacaattaACAGGAGTTTCTAATGCAGTTGACTTCAAGCAACAGTTACTCGCACAACAATCCTCCTTTTTCACTGCACTCCATCTCCCTACAGACCCACACTTCTGGCACACTGGACACATCACTTTCAATTAGCTTAATATAGGATGAAGCCTATACAAAGGTTACTACGACtatttgaactgtattttgATCATTCTTCTTGGGATTTCCTCCTGATAGACTCAAAAGTGGGCCCTTCACGCAAGATGTTTGGAAATGAGCTAACGATAAAATACAGAGCCATGTAATTATTGTTCATactaattcattaaaaacaagcatGTATTGTGTTCATGAGGAAAATCTATATATGCACTGCAGTTTCTAAATATGTGTAAATGGGAAAAACGTACGTCTGAAACCAGTGATGGTACAGATTCAGTTTTGAGCACATACTTTCTAGTTTCTTGGACACagtaacttgttttgttttaaaaaaaacgGGGGGCAGTTGTTTCGATTTCTGTCACTATTCAAGACAAGCAATCTGATACTACCTGAGATACTGACATGAATCAAAATCATCTTGGGCCCCTAATATAAGAATCACAGCAATTTGGCGGTATTTTATACTGCTGATTTTATATTGACGGGCACCGATTCTGGAGAGACTTTTTACTTCTAATATACAGAAGGatattctgaagtgtttaggtaCTATTTTCCCAGGGCAAGATCACTATGAGAAAAAAGGCATTTGTTCCAAGTGCAAAGAAGGGCACTGAAGATTTAATCTCACTGCATGGGACTCGGGAGTGCAGTAACAGTTCCTCAACCTAACCAATTAGAAACCCTATTTGTAACAGCCAGCTCCTCTCTTTTCTCCCTGAAGTAATGCCTTCCCCTACGTTCATGGCATAGGCTCGGtctacagttttattttattttccccaattTGACAGTCAAGTTATCTACAATGGCTATGGTGAAAGTATAAAATTTGACTTGTGTAACAGACGAACCTTACCTGCCTCAGGTTAAGATAAATGTTCATGAAGCCAGTACATACCTGCACCATATACAGACAATTGAGGAGCATACTAACATAAGACAGAGCTTCTATATACTGTTGCGAAGCTCCTACCTAATCCCATAAAGTCTACATCAAAAGCACAAGATGGGTAAAGGGATGGAGGAGGGCAGATGTGTGACATCATCCTTTATTCAAGCAATGATATCCATTTCAAGGAAGAGTTTCACGAGTCACGGTTCTACTTTTTACCTCTTCTTCCAGAGCTTGAAATGGATTATTTACTGACCACAGTGTTTTATAATcaggattaataaaataactatttaaaatagaaaCGCCAAAATGCAGGACAAAGCTCTTACATCTCAGTAACGGGGAGAACAGggacgttttttgttttttaaagaaataaagaataaaaaacacacactttaaatacattCCATGCAGACTGTGCACATTGTAAgcagagcaggaggaggagggggggtggggtacAACATATACACAAGACTTCCTCccagaaaaaaaattgtttcaCATTGATCCGAGATCAGCACAAGGCCTTGGACAGGGCAGCAGTTTGTGAGTGACCTGTTCAGTAGGTGTTTATTTCTCCTGCAGCAGGGCAGTGATGTTGATATTCCAGCCAATGGCCTGGCGGTCAAAGCCACAGGTAAACAGGTTGCAGGTTGGGTTGTCCTCACTCCAGGCAGAGCAGCACACCATGCGTCGATGTCCCTTCAAGTAACACCACAGATTACACATTTCTATCTATTCTCTAAGCCCTTCCTTtaaggttttttattttctaaatcattAGATGGAGCTGTAAATATCCCTTAGGAGACCCAGTGTGACATTATCAGTCTGCTCTGGGAACATttggtgagtgtatatacatttatttttatttttttgcccaGCCTGtgacatatatatgtaacaCTGACTTCCTAAGGGTTTTTATTCTGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45684 lncRNA downstream 84316 39812310 ~ 39813571 (-) True G36539
TU45676 lncRNA downstream 188359 39706602 ~ 39709528 (-) True G36534
TU45677 lncRNA downstream 188359 39707070 ~ 39709528 (-) False G36534
TU45651 lncRNA downstream 479931 39417002 ~ 39417956 (-) False AMCG00019724
TU45630 lncRNA downstream 517179 39379808 ~ 39380708 (-) True G36495
TU45719 lncRNA upstream 70999 39972756 ~ 40123987 (-) False AMCG00019731
TU45727 lncRNA upstream 288063 40189820 ~ 40191361 (-) True G36576
TU45736 lncRNA upstream 433386 40335143 ~ 40335556 (-) True G36582
TU45744 lncRNA upstream 502494 40404251 ~ 40404583 (-) True G36590
TU45759 lncRNA upstream 744716 40646473 ~ 40646687 (-) True G36605
AMCG00019726 mRNA downstream 67300 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019727 mRNA downstream 157644 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019725 mRNA downstream 169597 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019724 mRNA downstream 392325 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019721 mRNA downstream 527690 39363964 ~ 39370197 (-) True AMCG00019721
AMCG00019731 mRNA upstream 68418 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019734 mRNA upstream 827936 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019738 mRNA upstream 1646161 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019739 mRNA upstream 1672519 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019741 mRNA upstream 2169553 42071310 ~ 42078932 (-) False AMCG00019741
TU44832 other downstream 4842443 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 5375617 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 7664489 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 10212585 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 10251924 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 2642359 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 2742567 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 3396474 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 3675552 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 4994742 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile