RNA id: TU45736


Basic Information

Item Value
RNA id TU45736
length 414
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G36582
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 40335143 ~ 40335556 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctaccgctgtcttgaccacactgcaccaagctaccttcagtcactcgtctctccatacatcccctccagaccactgcgctcctccagtgccagaagactaactctgcctcctctccactctccttcctccagagccgctccttctcatccctggcccctaaatggtggaacgacctgcccaccgaagtcaaaacagcagagtccttgacctcattccggcgcttactcaagacgcatctcttccaacagcacttgtaatattagtcctctatccctgctagattgcacttcagcttattatgctcctcgcgttcttgattgttttcctccttgctccctttcccgtagccctagcctgtaaccctacatcttgacagcacttagctttcaccgtccaggatgtaggaagtctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45727 lncRNA downstream 143782 40189820 ~ 40191361 (-) True G36576
TU45719 lncRNA downstream 211156 39972756 ~ 40123987 (-) False AMCG00019731
TU45705 lncRNA downstream 433386 39897887 ~ 39901757 (-) True G36557
TU45684 lncRNA downstream 521572 39812310 ~ 39813571 (-) True G36539
TU45676 lncRNA downstream 625615 39706602 ~ 39709528 (-) True G36534
TU45744 lncRNA upstream 68695 40404251 ~ 40404583 (-) True G36590
TU45759 lncRNA upstream 310917 40646473 ~ 40646687 (-) True G36605
TU45814 lncRNA upstream 666506 41002062 ~ 41002677 (-) True G36650
TU45816 lncRNA upstream 674644 41010200 ~ 41010403 (-) True G36652
TU45865 lncRNA upstream 1393608 41729164 ~ 41729412 (-) True G36699
AMCG00019731 mRNA downstream 290852 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019726 mRNA downstream 504556 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019727 mRNA downstream 594900 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019725 mRNA downstream 606853 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019724 mRNA downstream 829581 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019734 mRNA upstream 394137 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019738 mRNA upstream 1212362 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019739 mRNA upstream 1238720 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019741 mRNA upstream 1735754 42071310 ~ 42078932 (-) False AMCG00019741
AMCG00019743 mRNA upstream 2053424 42388980 ~ 42406310 (-) True AMCG00019743
TU44832 other downstream 5279699 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 5812873 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 8101745 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 10649841 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 10689180 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 2208560 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 2308768 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 2962675 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 3241753 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 4560943 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile