RNA id: TU45740



Basic Information


Item Value
RNA id TU45740
length 309
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G36586
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 40369232 ~ 40369540 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gatcattaatatagattagaaaaagcaaaggccctagtactgatccctgtggaactccactaacaacctcactccagttagaagtgactcctctaatcgacaccctctgtttcctatacatcaaccagttcctAATCCATcaacttacattaccctgaatgcctacggcttccaatttgaggatcagtctttggtgtggaaccttatcaaaagctttttgaaaatctaagtatatcatatcatatgctttcacatgatctacagctgcagttgcatgttcaaaaaattccaataaattagtaagacatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45739 lncRNA upstream 20756 40348204 ~ 40348476 (+) True G36585
TU45657 lncRNA upstream 659692 39707066 ~ 39709540 (+) True G36516
TU45633 lncRNA upstream 938675 39392492 ~ 39430557 (+) True G36497
TU45597 lncRNA upstream 1110686 39258031 ~ 39258546 (+) True G36464
TU45583 lncRNA upstream 1286821 39082110 ~ 39082411 (+) True G36454
TU45742 lncRNA downstream 11683 40381223 ~ 40381424 (+) True G36588
TU45751 lncRNA downstream 84643 40454183 ~ 40454484 (+) True G36597
TU45752 lncRNA downstream 120376 40489916 ~ 40490115 (+) True G36598
TU45755 lncRNA downstream 210348 40579888 ~ 40580095 (+) True G36601
TU45758 lncRNA downstream 276908 40646448 ~ 40646687 (+) True G36604
AMCG00019729 mRNA upstream 450211 39913982 ~ 39919021 (+) True AMCG00019729
AMCG00019730 mRNA upstream 480209 39855185 ~ 39889023 (+) True AMCG00019730
AMCG00019728 mRNA upstream 538401 39812077 ~ 39830831 (+) True AMCG00019728
AMCG00019722 mRNA upstream 954347 39382147 ~ 39414885 (+) True AMCG00019722
AMCG00019723 mRNA upstream 1040391 39317255 ~ 39328841 (+) True AMCG00019723
AMCG00019733 mRNA downstream 321976 40691516 ~ 40702922 (+) True AMCG00019733
AMCG00019732 mRNA downstream 348943 40718483 ~ 40729666 (+) True AMCG00019732
AMCG00019737 mRNA downstream 935294 41304834 ~ 41312913 (+) True AMCG00019737
AMCG00019735 mRNA downstream 955154 41324694 ~ 41335203 (+) True AMCG00019735
AMCG00019736 mRNA downstream 978901 41348441 ~ 41358215 (+) True AMCG00019736
TU45249 other upstream 2853205 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 4069685 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 4305387 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 4305387 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 5517909 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 2187000 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 2591116 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 2892354 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 2960752 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 3683534 44053074 ~ 44056603 (+) True G37105

Expression Profile