RNA id: TU45744


Basic Information

Item Value
RNA id TU45744
length 305
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G36590
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 40404251 ~ 40404583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtggatgaggagcctcgccatgtcacttggtaggaccggtcactgaggtagggaggagaaccaggtgagagcagtcccagagatcccaaggtcagggTTAGGGGtaaccctaaccccaaccccaaccccaaccccaaccctaaccctgtgaggagaggttggggggtggatgaggagcctcgccatgtcacttggtaggaccggtcactgaggtaggaggagaaccaggtgagagcagtcccagagattccaaggtcagcgaggcaggagaggaggatggagtgatcaacggtgtcaaatgctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45736 lncRNA downstream 68695 40335143 ~ 40335556 (-) True G36582
TU45727 lncRNA downstream 212890 40189820 ~ 40191361 (-) True G36576
TU45719 lncRNA downstream 280264 39972756 ~ 40123987 (-) False AMCG00019731
TU45705 lncRNA downstream 502494 39897887 ~ 39901757 (-) True G36557
TU45684 lncRNA downstream 590680 39812310 ~ 39813571 (-) True G36539
TU45759 lncRNA upstream 241890 40646473 ~ 40646687 (-) True G36605
TU45814 lncRNA upstream 597479 41002062 ~ 41002677 (-) True G36650
TU45816 lncRNA upstream 605617 41010200 ~ 41010403 (-) True G36652
TU45865 lncRNA upstream 1324581 41729164 ~ 41729412 (-) True G36699
TU45876 lncRNA upstream 1545530 41950113 ~ 41950329 (-) True G36710
AMCG00019731 mRNA downstream 359960 39970175 ~ 40044291 (-) True AMCG00019731
AMCG00019726 mRNA downstream 573664 39826355 ~ 39830587 (-) True AMCG00019726
AMCG00019727 mRNA downstream 664008 39733389 ~ 39740243 (-) True AMCG00019727
AMCG00019725 mRNA downstream 675961 39710987 ~ 39728290 (-) True AMCG00019725
AMCG00019724 mRNA downstream 898689 39416887 ~ 39505562 (-) True AMCG00019724
AMCG00019734 mRNA upstream 325110 40729693 ~ 40766188 (-) True AMCG00019734
AMCG00019738 mRNA upstream 1143335 41547918 ~ 41563384 (-) True AMCG00019738
AMCG00019739 mRNA upstream 1169693 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019741 mRNA upstream 1666727 42071310 ~ 42078932 (-) False AMCG00019741
AMCG00019743 mRNA upstream 1984397 42388980 ~ 42406310 (-) True AMCG00019743
TU44832 other downstream 5348807 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 5881981 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 8170853 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 10718949 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 10758288 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 2139533 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 2239741 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 2893648 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 3172726 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 4491916 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile