RNA id: TU45886



Basic Information


Item Value
RNA id TU45886
length 212
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G36720
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42037159 ~ 42037370 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


acaaaaagaataaaaagacaaaaacatttaatgccTCTGTCTAATCTAcgatcaaagaaaacaaacaaactcgcTGTCTTTTGTCTCTCATTCGCTTGAGAATCAATTCTTTCTTATCTCCCCTGCACCACACAGTCAATGAACTACAAAAGCCGCCCACATGACGTGTCAAATGCTGGCCAATTCTTCATGCTGGAAATGAGGACACAAAc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45882 lncRNA upstream 3643 42033015 ~ 42033516 (+) True G36716
TU45875 lncRNA upstream 86809 41950125 ~ 41950350 (+) True G36709
TU45864 lncRNA upstream 307748 41729162 ~ 41729411 (+) True G36698
TU45818 lncRNA upstream 894585 41142190 ~ 41142574 (+) True G36654
TU45808 lncRNA upstream 1165844 40871108 ~ 40871315 (+) True G36644
TU45910 lncRNA downstream 176816 42214186 ~ 42270922 (+) True G36744
TU45920 lncRNA downstream 274178 42311548 ~ 42312172 (+) True G36754
TU45982 lncRNA downstream 494647 42532017 ~ 42532709 (+) True G36807
TU45992 lncRNA downstream 506855 42544225 ~ 42544526 (+) True G36816
TU46019 lncRNA downstream 545150 42582520 ~ 42582758 (+) True G36842
AMCG00019740 mRNA upstream 170682 41691571 ~ 41866477 (+) True AMCG00019740
AMCG00019736 mRNA upstream 678944 41348441 ~ 41358215 (+) True AMCG00019736
AMCG00019735 mRNA upstream 701956 41324694 ~ 41335203 (+) True AMCG00019735
AMCG00019737 mRNA upstream 724246 41304834 ~ 41312913 (+) True AMCG00019737
AMCG00019732 mRNA upstream 1307493 40718483 ~ 40729666 (+) True AMCG00019732
AMCG00019742 mRNA downstream 337098 42374468 ~ 42385648 (+) True AMCG00019742
AMCG00019745 mRNA downstream 471232 42508602 ~ 42527208 (+) True AMCG00019745
AMCG00019746 mRNA downstream 508077 42545447 ~ 42552673 (+) True AMCG00019746
AMCG00019747 mRNA downstream 519929 42557299 ~ 42572080 (+) False AMCG00019747
AMCG00019751 mRNA downstream 587360 42624730 ~ 42627105 (+) True AMCG00019751
TU45249 other upstream 4521132 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 5737612 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 5973314 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 5973314 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 7185836 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 519170 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 923286 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 1224524 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 1292922 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 2015704 44053074 ~ 44056603 (+) True G37105

Expression Profile