RNA id: TCONS_00010743


Basic Information

Item Value
RNA id TCONS_00010743
length 233
lncRNA type intronic
GC content 0.21
exon number 1
gene id XLOC_004751
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26691819 ~ 26692051 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttttgttttgttttacacttTAAAATTACTATAATTAAGTGCTCAATGTACcattggaaagaaaaaaaaatatatatatatactcattattttagtataaaaatgataataatatacagttgaagtcagaattattagccccctttaaattttatttaattaaaaaaatatatatatttcccaaattatgtttatcagagcaagaacattttcacagtatgtctgataatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010942 lncRNA upstream 98521 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA upstream 98521 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00010940 lncRNA upstream 199846 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010742 lncRNA upstream 1187439 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00009377 lncRNA upstream 1218613 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010944 lncRNA downstream 45380 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00009402 lncRNA downstream 202270 26894321 ~ 26896616 (+) True XLOC_004754
TCONS_00009425 lncRNA downstream 521709 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009431 lncRNA downstream 539693 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010945 lncRNA downstream 1684979 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00009395 mRNA upstream 79848 26608883 ~ 26611971 (+) True XLOC_004749
TCONS_00009394 mRNA upstream 144571 26538861 ~ 26547248 (+) True XLOC_004747
TCONS_00009393 mRNA upstream 166120 26512569 ~ 26525699 (+) True XLOC_004746
TCONS_00009392 mRNA upstream 196968 26491637 ~ 26494851 (+) True XLOC_004745
TCONS_00009391 mRNA upstream 205337 26471712 ~ 26486482 (+) True XLOC_004743
TCONS_00009400 mRNA downstream 14694 26706745 ~ 26715946 (+) True XLOC_004750
TCONS_00009401 mRNA downstream 185330 26877381 ~ 26964998 (+) True XLOC_004753
TCONS_00009404 mRNA downstream 329928 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009403 mRNA downstream 329928 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009405 mRNA downstream 330466 27022517 ~ 27027017 (+) False XLOC_004755
TCONS_00009383 other upstream 1043576 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1213913 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1440032 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 2126227 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2273479 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 442818 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 464892 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 526942 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 539244 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 2253481 28945532 ~ 28945646 (+) True XLOC_004786