RNA id: TU45980


Basic Information

Item Value
RNA id TU45980
length 2629
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G36805
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42523163 ~ 42528691 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAATGATTttttttttttgtatctaaaAAACAGCTTAGCATATTTAACCACAAGTTTAAAAGGTGgggggtaaaataaaataaaaataaataaaaacgaaGCTCCTAATGTGAAATGCCAGAAGCGTGACAGCAAGGGTAACTGTGGTGACACTGTATATTGAAGCAAATATAAACCCACGATCACATTTTCACATCTCACCACTCCAAAATGAAATACTCCTGTTCGTCTCAGCTGAGCTCAAGGGATCAATGTCTTaatcatgataaaaaaaacCTGATAGAAAAAGCATTTCCGTTAACTCATTTACTGCCACAGGGTTTATCTACACATGCCATCAGAAATGACCTTGTCAAGTAGATGAAGGCCTTGTCTCTTTTCAAAGTAGAACCATGGAGCAGAGGATGCGGACTGTGTCTCCTGGCTTTGAAGCTTAACTTGATTTTAGGTCTCTCTCAGCAACCAGAGGGAAAAGTGAGAAAACATCACAAACATGAATTAGTTTAGAAGAAACAAACTGCAGGTGATAGTCTCTTTTTCAGGTTCTCTTTACCATACAAATAAAAGCTGCAATGAAGGTCAAATTTAGAGatctaattttgtttttatcctaaGATGTTATTTATGATACAAATCTACTTAAAGAAAATTAAGGTgttactgttaaaaaataaaaaaaagttagtgcatgaagaaaatatatattacaacaaTACCTTAATGTCtgcagccatgttttttttttccacaaaaagaCTTTATTGTATGATGCTTTACGATGCATactgaaaatgtacagtaaatctGCATGGGTCACTTCACATGCAGGGAAGTCTACTGATATTACAATAAGCAAAGACAAACTTAGATTGGGCAACACTACACTTTGGGttctttccccccctcttttcttttcctaaaTCCCCTAAAATGTGTCAACAGTACAAAGGAAAAGGTAAAGAAGCAATTACCGCTTAAAATAAGCAGGTGTATACTCAAGAGCGGAAGGAATATGCCTGTATTGAAAGACAACATGATCGCAAAAATGAGAGGTCAAAAGacaagacaataaaacaaaacaaaaaatctataaCCATAAAAAGTGCTAACTTTCCATGAAGTTAAACGCAACTTTTAAAACTCAGACCAAAGAAATGCCCACTTAGCCCTGACATGCAGttactaaagaaaaaaataaaaaataaatttatgTATAGCTACACTGTAGTTCAGATAAGTGTGAACGGTTCTgcaaagattttatttataaaagaagCAGTACACTGAAGGCGCCATCATCCATCAAAACTTCCCCTattagtgtgtagtgtgtggttaatttaatttacttttttcaatttcaactGCCAAGCCATTTTGGAGGGAGAAAACAACTATCAtaatcaaaccaaaaacaaaatgtcgGCACTTAGCTCaaggtggttgttttttttgttgttttgtttgtttttcacatttaggAACATGCACGAGGCAAAATGCCAAAAAGCCAAACACTCTTCAGTACGGTCTTTGCCAGTGTGTACTAATGTGCAAGAACACCAGTGAAGTTGATGGGTTTAAGCTTACCTTCAGTGTACTGAAAGTGGTACACAACCTGCTTTAAAAGAGGAGACCGTCACTGCAGGCAGGCTCAAGTAGGACAGACCTCCCTTCGGCACAGAACTACACCAAGGGCATTCTGCTGTGGCCTGCACACATACACCTAGGAAAACGTGAATATAAACAGCATTTACGCTGGTCTTTTCACAGAAAGCATGGTTGCCAAATCTGCACAAACactaaacacactcacacacacacacatatgtatacatatatgtgtgtaggtgtatgtgtgtgtgtaggtttaaaaaaaaaagatacaagtTATGGCATAAACAACGCTCTGTAAAATGTGTACAATCATAGAAAGcgcttttatttagttttaggATTCTCTGTGCAGCCTTGGCAACTTTCCCTACAATCAGAATctgaacaatacaataatttatttacagtcATTATATCCTCTGCAACAATACCTGCAAGGGCCCAAGAATGAgcgattctttttttttttttttttattgaaaaaactaaataaaaatctaGGGATCAGCTTTTCTCCCCCAACTTTAAATATTAACCGGAATGGCCCATGTGGAAAGTAAATAATTTGCCAACTAAAACTGGCCTTTGACGTTCGAATTTCAAAACTGCCTTTTAAGCCGGGAGCTGAGCTTGCTGCAGGTTGTGTGAAAGATTCTTGGACCCCTACTTTGGTGCTGTacttcataataaaacaaaagtatttatgtgggtgaaaataaaaaacaaaacaaaaaaaacattacttaaaaatatgtttttctatgAATCCTTCAGTCTCTGAGGTTATTCCGAGACCCAATGTACTTGTGTGCTCAGATCTTCTCCTGAATGAAGAGATGCTGCAGAGCCTGGTTGATGCTGATTCTCTTGGCTGGATCCAGCATCAAGATCTGGTCCAGCAAGTCCTTCAGCTGAATGACCTTCTTCCGCTGATCCTCAGGCAACCTCTGACAGCCGATCATGTCAGTTAACAGGTCCTTGGTGGGGTTAATGGTGCTCATCACGGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45959 lncRNA downstream 70223 42452665 ~ 42452940 (-) True G36787
TU45906 lncRNA downstream 448496 42071062 ~ 42074667 (-) True AMCG00019741
TU45888 lncRNA downstream 485428 42037535 ~ 42037735 (-) True G36722
TU45876 lncRNA downstream 572834 41950113 ~ 41950329 (-) True G36710
TU45865 lncRNA downstream 793751 41729164 ~ 41729412 (-) True G36699
TU46018 lncRNA upstream 53452 42582143 ~ 42582473 (-) True G36841
TU46063 lncRNA upstream 233840 42762531 ~ 42762734 (-) True G36882
TU46113 lncRNA upstream 319766 42848457 ~ 42848686 (-) True G36894
TU46126 lncRNA upstream 413551 42942242 ~ 42942499 (-) True G36907
TU46206 lncRNA upstream 738202 43266893 ~ 43303060 (-) True G36977
AMCG00019748 mRNA downstream 15187 42492064 ~ 42507976 (-) True AMCG00019748
AMCG00019744 mRNA downstream 80392 42414610 ~ 42442771 (-) True AMCG00019744
AMCG00019743 mRNA downstream 116853 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019741 mRNA downstream 444231 42071310 ~ 42078932 (-) False AMCG00019741
AMCG00019739 mRNA downstream 946858 41574276 ~ 41576305 (-) True AMCG00019739
AMCG00019749 mRNA upstream 5213 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019752 mRNA upstream 32878 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019754 mRNA upstream 167138 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019756 mRNA upstream 446677 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019757 mRNA upstream 489418 43018109 ~ 43151658 (-) True AMCG00019757
TU44832 other downstream 7467719 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 8000893 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 10289765 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 12837861 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 12877200 29638566 ~ 29645963 (-) False AMCG00019554
TU45993 other upstream 15425 42544116 ~ 42544524 (-) True G36817
TU46040 other upstream 115633 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 769540 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 1048618 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 2367808 44896499 ~ 44910150 (-) False AMCG00019799

Expression Profile