RNA id: TU45982



Basic Information


Item Value
RNA id TU45982
length 693
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G36807
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42532017 ~ 42532709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GATCTTCCCAcccattgtttatttttcccaccAGTGCCTTTGTACGGCTACTTTactttgttgtgtttatgtCAAGTCAGTTTGGTTACCATAGTAAGCACAGTGATCTTACTGGCACTTAGAGACACAAGGGATTCTGCACAGAAGTCAAcaacttcatttattttaaaagcctggTGTGTTCTTTGGGCTAAAGAAGTGCTGTGAATTTAAGGACTTAATTGCAGGGTTTTTCttactttgtttatttagtaATGGTATGTCTGCATAAATAAGCaccttatttattgatttaaacaaataattaattctagacattttaaaataatgttatacttACTCGTATCCACATACGCACACATGTGTAGAGCCTGCTGCTGTAAATGGAGAATTACACTGGCAGTTCAAAGGGAAAAACTGAAACAGTGCCGTCTTGCTGGTCAGATTCACACAAGTCCAGTCAGTCCTTCTTGTGGTTGTGGTTCTTACAGCGTTTCTGTTGGGCACCCAGGCGCTTTGCAAATGGGTGTTACTCGGTCCTTTTAGAAAAGTAGTGGAAAATAGGAGCGTTGCCTTGGGCAGAAGGAGTTGCTTTCTTACAGATGTAGTATCCATTGTTATGTGCACCCAAGCCGTGTGAAGGGGAGATTTATTAGAGAAGGCGAGATCAGTGTGCAGGGACCTTAACATCTG

Function


GO: NA

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45920 lncRNA upstream 219845 42311548 ~ 42312172 (+) True G36754
TU45910 lncRNA upstream 261095 42214186 ~ 42270922 (+) True G36744
TU45886 lncRNA upstream 494647 42037159 ~ 42037370 (+) True G36720
TU45882 lncRNA upstream 498501 42033015 ~ 42033516 (+) True G36716
TU45875 lncRNA upstream 581667 41950125 ~ 41950350 (+) True G36709
TU45992 lncRNA downstream 11516 42544225 ~ 42544526 (+) True G36816
TU46019 lncRNA downstream 49811 42582520 ~ 42582758 (+) True G36842
TU46021 lncRNA downstream 52149 42584858 ~ 42585152 (+) True G36844
TU46022 lncRNA downstream 70100 42602809 ~ 42603022 (+) True G36845
TU46031 lncRNA downstream 92516 42625225 ~ 42625818 (+) False AMCG00019751
AMCG00019745 mRNA upstream 4809 42508602 ~ 42527208 (+) True AMCG00019745
AMCG00019742 mRNA upstream 146369 42374468 ~ 42385648 (+) True AMCG00019742
AMCG00019740 mRNA upstream 665540 41691571 ~ 41866477 (+) True AMCG00019740
AMCG00019736 mRNA upstream 1173802 41348441 ~ 41358215 (+) True AMCG00019736
AMCG00019735 mRNA upstream 1196814 41324694 ~ 41335203 (+) True AMCG00019735
AMCG00019746 mRNA downstream 12738 42545447 ~ 42552673 (+) True AMCG00019746
AMCG00019747 mRNA downstream 24590 42557299 ~ 42572080 (+) False AMCG00019747
AMCG00019751 mRNA downstream 92021 42624730 ~ 42627105 (+) True AMCG00019751
AMCG00019750 mRNA downstream 121938 42654647 ~ 42662493 (+) True AMCG00019750
AMCG00019753 mRNA downstream 185224 42717933 ~ 42740339 (+) True AMCG00019753
TU45249 other upstream 5015990 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6232470 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 6468172 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 6468172 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 7680694 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 23831 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 427947 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 729185 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 797583 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 1520365 44053074 ~ 44056603 (+) True G37105

Expression Profile