RNA id: TU45992



Basic Information


Item Value
RNA id TU45992
length 302
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G36816
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42544225 ~ 42544526 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCAGCTCCTGTTTGttgaacagacagatgttccgtccctcccacagggcctgcttcACTGTGCAGatgacacgccaccagcacctcagggtggaTGATGATATTCCCCTGGCCGGACCgtacaggatctgctgggcggtcgcccgcacaggaacggcaaacctgtggaggaacggagaaaacaggagccagaccctgcaggcggagatgtgagcctccgtctccttccccaggcaacccttgtaggggcagatgtcataaggggctaggccccttctgtgcatgaacactcgggtggggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45982 lncRNA upstream 11516 42532017 ~ 42532709 (+) True G36807
TU45920 lncRNA upstream 232053 42311548 ~ 42312172 (+) True G36754
TU45910 lncRNA upstream 273303 42214186 ~ 42270922 (+) True G36744
TU45886 lncRNA upstream 506855 42037159 ~ 42037370 (+) True G36720
TU45882 lncRNA upstream 510709 42033015 ~ 42033516 (+) True G36716
TU46019 lncRNA downstream 37994 42582520 ~ 42582758 (+) True G36842
TU46021 lncRNA downstream 40332 42584858 ~ 42585152 (+) True G36844
TU46022 lncRNA downstream 58283 42602809 ~ 42603022 (+) True G36845
TU46031 lncRNA downstream 80699 42625225 ~ 42625818 (+) False AMCG00019751
TU46114 lncRNA downstream 323876 42868402 ~ 42868634 (+) True G36895
AMCG00019745 mRNA upstream 17017 42508602 ~ 42527208 (+) True AMCG00019745
AMCG00019742 mRNA upstream 158577 42374468 ~ 42385648 (+) True AMCG00019742
AMCG00019740 mRNA upstream 677748 41691571 ~ 41866477 (+) True AMCG00019740
AMCG00019736 mRNA upstream 1186010 41348441 ~ 41358215 (+) True AMCG00019736
AMCG00019735 mRNA upstream 1209022 41324694 ~ 41335203 (+) True AMCG00019735
AMCG00019746 mRNA downstream 921 42545447 ~ 42552673 (+) True AMCG00019746
AMCG00019747 mRNA downstream 12773 42557299 ~ 42572080 (+) False AMCG00019747
AMCG00019751 mRNA downstream 80204 42624730 ~ 42627105 (+) True AMCG00019751
AMCG00019750 mRNA downstream 110121 42654647 ~ 42662493 (+) True AMCG00019750
AMCG00019753 mRNA downstream 173407 42717933 ~ 42740339 (+) True AMCG00019753
TU45249 other upstream 5028198 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6244678 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 6480380 36046490 ~ 36063845 (+) False AMCG00019662
TU44999 other upstream 6480380 36046490 ~ 36063845 (+) False AMCG00019662
TU44804 other upstream 7692902 34840316 ~ 34851323 (+) True AMCG00019641
TU46002 other downstream 12014 42556540 ~ 42558936 (+) True AMCG00019747
TU46131 other downstream 416130 42960656 ~ 42962658 (+) True AMCG00019755
TU46165 other downstream 717368 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 785766 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 1508548 44053074 ~ 44056603 (+) True G37105

Expression Profile