RNA id: TU45993


Basic Information

Item Value
RNA id TU45993
length 409
RNA type TUCP
GC content 0.58
exon number 1
gene id G36817
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42544116 ~ 42544524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccacccgagtgttcatgcacagaaggggcctagccccttatgacatctgcccctacaagggttgcctggggaaggagacggaggctcacatctccgcctgcagggtctggctcctgttttctccgttcctccacaggtttgccgttcctgtgcgggcgaccgcccagcagatcctgtacGGTCCGGCCAGGGGAATATCATCAtccaccctgaggtgctggtggcgtgtcatCTGCACAGTgaagcaggccctgtgggagggacggaacatctgtctgttcaaCAAACAGGAGCTGGACCCTGTCATCAcacggaggggcatggtactaaTTAGGGATTACGTCAaactggaggtccatcagaggggcaaggaggaagcctttaagaactggcagatacaagatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45980 lncRNA downstream 15425 42523163 ~ 42528691 (-) True G36805
TU45959 lncRNA downstream 91176 42452665 ~ 42452940 (-) True G36787
TU45906 lncRNA downstream 469449 42071062 ~ 42074667 (-) True AMCG00019741
TU45888 lncRNA downstream 506381 42037535 ~ 42037735 (-) True G36722
TU45876 lncRNA downstream 593787 41950113 ~ 41950329 (-) True G36710
TU46018 lncRNA upstream 37619 42582143 ~ 42582473 (-) True G36841
TU46063 lncRNA upstream 218007 42762531 ~ 42762734 (-) True G36882
TU46113 lncRNA upstream 303933 42848457 ~ 42848686 (-) True G36894
TU46126 lncRNA upstream 397718 42942242 ~ 42942499 (-) True G36907
TU46206 lncRNA upstream 722369 43266893 ~ 43303060 (-) True G36977
AMCG00019749 mRNA downstream 1662 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019748 mRNA downstream 36140 42492064 ~ 42507976 (-) True AMCG00019748
AMCG00019744 mRNA downstream 101345 42414610 ~ 42442771 (-) True AMCG00019744
AMCG00019743 mRNA downstream 137806 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019741 mRNA downstream 465184 42071310 ~ 42078932 (-) False AMCG00019741
AMCG00019752 mRNA upstream 17045 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019754 mRNA upstream 151305 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019756 mRNA upstream 430844 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019757 mRNA upstream 473585 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019760 mRNA upstream 729506 43274030 ~ 43282805 (-) True AMCG00019760
TU44832 other downstream 7488672 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 8021846 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 10310718 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 12858814 29679229 ~ 29685302 (-) True G35101
TU43875 other downstream 12898153 29638566 ~ 29645963 (-) False AMCG00019554
TU46040 other upstream 99800 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 753707 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 1032785 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 2351975 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 3820814 46365338 ~ 46393098 (-) True G37492

Expression Profile