RNA id: TU46018


Basic Information

Item Value
RNA id TU46018
length 331
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G36841
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42582143 ~ 42582473 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGGTTCTTCATCTATTTTCTTGGGCAAATCTTTGCAGCCGGTACTTCTTCATTATTTTCCAGTTATAATTTTTGCAATGatctgcctttctttttcatttgtggtgtttttatatttattcctAATTTCTTCTGTCATAGATGCATGCAACAGCAGGTTTCTTCAAATAGCCAGACTAACTGAATGATTTCTCAGCATGGAGTTAACTTTAGAGCGAGGAGATTTTGTTTATAGCATGAGCTGACACCTCTTCttatacttttcctttttccatttttctttctcgTAAGAGGCCTTAAGCTTCTCCATTTCTTTGCAGAGTTTATTCC

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45980 lncRNA downstream 53452 42523163 ~ 42528691 (-) True G36805
TU45959 lncRNA downstream 129203 42452665 ~ 42452940 (-) True G36787
TU45906 lncRNA downstream 507476 42071062 ~ 42074667 (-) True AMCG00019741
TU45888 lncRNA downstream 544408 42037535 ~ 42037735 (-) True G36722
TU45876 lncRNA downstream 631814 41950113 ~ 41950329 (-) True G36710
TU46063 lncRNA upstream 180058 42762531 ~ 42762734 (-) True G36882
TU46113 lncRNA upstream 265984 42848457 ~ 42848686 (-) True G36894
TU46126 lncRNA upstream 359769 42942242 ~ 42942499 (-) True G36907
TU46206 lncRNA upstream 684420 43266893 ~ 43303060 (-) True G36977
TU46213 lncRNA upstream 747816 43330289 ~ 43333313 (-) True AMCG00019761
AMCG00019752 mRNA downstream 1759 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019749 mRNA downstream 39689 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019748 mRNA downstream 74167 42492064 ~ 42507976 (-) True AMCG00019748
AMCG00019744 mRNA downstream 139372 42414610 ~ 42442771 (-) True AMCG00019744
AMCG00019743 mRNA downstream 175833 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019754 mRNA upstream 113356 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019756 mRNA upstream 392895 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019757 mRNA upstream 435636 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019760 mRNA upstream 691557 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019761 mRNA upstream 749958 43332431 ~ 43342706 (-) False AMCG00019761
TU45993 other downstream 37619 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 7526699 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 8059873 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 10348745 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 12896841 29679229 ~ 29685302 (-) True G35101
TU46040 other upstream 61851 42644324 ~ 42656393 (-) True G36862
TU46211 other upstream 715758 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 994836 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 2314026 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 3782865 46365338 ~ 46393098 (-) True G37492

Expression Profile