RNA id: TU46040


Basic Information

Item Value
RNA id TU46040
length 1279
RNA type TUCP
GC content 0.56
exon number 2
gene id G36862
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 42644324 ~ 42656393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTAACTGCAAAATTCTCCGGTTTGATGTCGCAGAGGTGAAGCCTGTAAGAAAAGTCGTCCTCAAAGTGCCGGACCATGTCCAGGAAACTGAGTGCGATCTTATGGATGGCTTCTCTCAAAGCTCTGCTGCTGTGTATTGCCGTGGAGGGGCCAATCAGTCCCTCCAAAGGGAAGAGGTTCTGGTGCCACATGTGTCCAGCTATGAGGTACTCGACGGCGTAGAAGTGGCCGCAGGAGCCCAGGACTTTGACCACATGTGTGCTGAGATCCTGCAATATCCTGAAGAAGGTGTACTCCTCCTGCTGCATCAGCGCCCACATGGACGCCAGCTCGGCTCTGGTGTAGGGCACGGTTCTTTCCTGTAGCTCCGTGGTCCATAGCCGCGGCACGGTGGTGTTCTTCAGCTCCAGGCCCAGGGAGTTTTTGATCTCCATGGCGGCATAGAAGACGATATCCATGGGGGAGATCTCGTGCATGTCCTGGTACTCCAGCAGGCCAAAGGTCTCGTAGGCCGAGAAGTTCTCCAGCTTGGATTTGAGGACAATGGGGCGCCCCTGCCAGTCCGCCTCGATGACTTTCTTGCCATTTTCGTAGTAAAGGCAGCGCTTGTACACCACCCTGTGGAGGATACACAGGTCTTCACACAGGTCCCCGCTGAGGATGCCCTGTCCATACTCATCACActgcaCTCTCTCCAGAATCCGTTTACTTCTGTCATCACTGCAGAAGTCAGAGAAGATGGTCTTGTGCATGAACACTAAACCGTTCACAAAGATCCAAAAGGCCAACCAGAACAGGACAAACAGCACGGTGGACCTCCTGCAAATCCTCACCCCCAGCCACCTGCAGACACCGCTCCCCAAGGCTCGCATTGCCCGCGGACAGCACTTACACTGCGGCGGGACATGCGAGCCGCTCCACGGCGACCAATGGACCAACTAGCTCAGTCATTTTGGGGACGTGTGCCACCCTCCGCTGTGAGAAGTTGGTGCGCTCGCCTCGGCTGCCAAACGGACACAACGCGCTGTCTTTCGGCGAGTCTTGCTTTGCATGCTGCGCGGCTGTGCAGTGCGCCCTCCCCGGCGCCCCGCTCCCTCGACTCCCCTCTCCTGAATGGAGACCCTTTGCTCTCCAGAGCTGTCGGACTTGCCTCCTCCACGGCTGAACTCAGTGGCAGTCAGAGGGCTGAGAGCTCCTTTTACAAATGTAAGCCTTCTGTTCCacccttttgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46018 lncRNA downstream 61851 42582143 ~ 42582473 (-) True G36841
TU45980 lncRNA downstream 115633 42523163 ~ 42528691 (-) True G36805
TU45959 lncRNA downstream 191384 42452665 ~ 42452940 (-) True G36787
TU45906 lncRNA downstream 569657 42071062 ~ 42074667 (-) True AMCG00019741
TU45888 lncRNA downstream 606589 42037535 ~ 42037735 (-) True G36722
TU46063 lncRNA upstream 106138 42762531 ~ 42762734 (-) True G36882
TU46113 lncRNA upstream 192064 42848457 ~ 42848686 (-) True G36894
TU46126 lncRNA upstream 285849 42942242 ~ 42942499 (-) True G36907
TU46206 lncRNA upstream 610500 43266893 ~ 43303060 (-) True G36977
TU46213 lncRNA upstream 673896 43330289 ~ 43333313 (-) True AMCG00019761
AMCG00019752 mRNA downstream 63940 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019749 mRNA downstream 101870 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019748 mRNA downstream 136348 42492064 ~ 42507976 (-) True AMCG00019748
AMCG00019744 mRNA downstream 201553 42414610 ~ 42442771 (-) True AMCG00019744
AMCG00019743 mRNA downstream 238014 42388980 ~ 42406310 (-) True AMCG00019743
AMCG00019754 mRNA upstream 39436 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019756 mRNA upstream 318975 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019757 mRNA upstream 361716 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019760 mRNA upstream 617637 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019761 mRNA upstream 676038 43332431 ~ 43342706 (-) False AMCG00019761
TU45993 other downstream 99800 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 7588880 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 8122054 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 10410926 32222064 ~ 32233398 (-) True G35476
TU43881 other downstream 12959022 29679229 ~ 29685302 (-) True G35101
TU46211 other upstream 641838 43298231 ~ 43360906 (-) True G36982
TU46276 other upstream 920916 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 2240106 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 3708945 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 5235810 47892203 ~ 47901603 (-) False AMCG00019824

Expression Profile