RNA id: TU46206


Basic Information

Item Value
RNA id TU46206
length 818
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G36977
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43266893 ~ 43303060 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCATATACTGTGCTTTCACagggatttttttaaactgctctAAATGAAGCAATTCCAACCAAGAACCGGCTCCTTTCTTCAACTTACATTGTGACCCACAGGGCACTGGGAAAGTGAAATAACACACCTCATGACAGTTTTCATTGCATCTTTTATTTAATCTCCATTCTGCAGCCAAGTGCAGTCGTATAATAATTGAAAATCGAAATAGCAAAGATAAGGAATAAAATGGGTTTAAGTTTTCCCATGTCACCGTACCTCAGGTGAGGCCTATATTGCTTAAACTACATTGCTTTAAGCTCTTGTTCAGTAACTGAACTGACGTCAAGGTTAAAAATAAGAGCCCCCTCTTTGCCTCTACAAGGCATAGGCGAAAGCCGCATTCTGCATATTTCATGGCTATTACCTGTTTTCGTGCATGTTTGCCTACACTGGCGTGTGCAGTGTAAATAATACGAAAgcccatatacactcacctaaaggattattaggaacaccatactaatactGTGTTTGACCCTGTCCTACTTGTTGGCAGGGGTGCGtggagaaaaatacatacaaataatgtttttaaacactCATGAGCAGAAAGGCTTCAAATGCCTGACCTATTAGGTTAAAGAGGGTTAATGACTGAATGGGTTATTTGTACTGATGAAGTAAATCTATATACCatatacatactatatatagCAAATCAATAGCCttgatttaaaatagaaatatgagTTTCTCCGAGCCCCCTTCGCTCAGCAGCCTTATCGTTcactttgacaaaataaatcccTGGAGGCATATATCACTTCCTTCAGAT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46126 lncRNA downstream 324394 42942242 ~ 42942499 (-) True G36907
TU46113 lncRNA downstream 418207 42848457 ~ 42848686 (-) True G36894
TU46063 lncRNA downstream 504159 42762531 ~ 42762734 (-) True G36882
TU46018 lncRNA downstream 684420 42582143 ~ 42582473 (-) True G36841
TU45980 lncRNA downstream 738202 42523163 ~ 42528691 (-) True G36805
TU46213 lncRNA upstream 27229 43330289 ~ 43333313 (-) True AMCG00019761
TU46265 lncRNA upstream 223347 43526407 ~ 43555509 (-) False G37022
TU46264 lncRNA upstream 248248 43551308 ~ 43555509 (-) True G37022
TU46263 lncRNA upstream 252683 43555743 ~ 43556744 (-) True G37021
TU46277 lncRNA upstream 309304 43612364 ~ 43656444 (-) False AMCG00019768
AMCG00019757 mRNA downstream 115235 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019756 mRNA downstream 290555 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019754 mRNA downstream 551283 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019752 mRNA downstream 686509 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019749 mRNA downstream 724439 42533904 ~ 42542454 (-) True AMCG00019749
AMCG00019761 mRNA upstream 29371 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019763 mRNA upstream 66836 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019765 mRNA upstream 253839 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019768 mRNA upstream 274448 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019769 mRNA upstream 501100 43804160 ~ 43809705 (-) True AMCG00019769
TU46040 other downstream 610500 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 722369 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8211449 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 8744623 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 11033495 32222064 ~ 32233398 (-) True G35476
TU46276 other upstream 274249 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 1593439 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 3062278 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4589143 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 5219608 48522668 ~ 48523702 (-) True G37806

Expression Profile