RNA id: TU46211


Basic Information

Item Value
RNA id TU46211
length 3319
RNA type TUCP
GC content 0.45
exon number 2
gene id G36982
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43298231 ~ 43360906 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatgtattgccTTCTCACCCTTGCCAAGTGCCCCCCccaacaaatgtttaaattccCATCAGTGTTCTAATGTACGCTCCATATATGTTTGCCCAATCACAGCTTAACACACAAGTATTTTGCATTAGAAAACAGGAATCTTGCCTTCGAGTCAAAACTAAAGCCGCCATTTATCATCCGTGTCATATTGTGTGATTTCTCGGGTGGGTCAGTTCTGTTTGGTCCAGCTTCATGTGCAGTTAGCAAGTGGGAATGTGGGAGTGTTTGAACTAACAATTCTGCTTTTTTGACACTGGGACTGTTGGTTTGTTGATGTTTTATGAACCACTGACCATTCTGCCTAATATACACAGTCTTTACACCCATTGTCTAATGCTGTGTGTGATTTGCCACCAGGGATGGTGGGGATTTTACCCCCTTCTGCtttttttatcccccccccGAGCGTTATATTTTACCCTGTTGGGGACACGGTATATCCCCACTTCTGATATGCATTTGTACATTCAATCCCAGTATTTAATGGGTCATTTCCCAAATCTTACATAAGACTAgtactgtaaaatatacatacttAACTGTCACTTATTGACCTTGTTTTGCTGTGACTCGCCCCCTGTCACTGCATTTGCCCTTCACATCACATCCTCActcactgtcattttaaaacctgCCTTCTTACCCAAACTCTCCCTTCTCGTCGCACAACATACTTTTTTATTGGCAAATGTTGAAcgtcctaaaaaaaaaaaaaactcctcgATTGACGGTGGAAGTCTTTAGCGATCAGTTATTTGTTAACGACCAATAGTTGTTCAAAACTGCTTAAAATTGGCGTACACCATCACCATACATCATCATTCATATAAGATCAAGTTCAAGTGATGCCGAACTAGAAAGCCTAGCCAGAGTTAATTTGCCTGTGTACGTGCAGTTTAATTTCTACGGCCGTGATACAGGCTGGTACCAGAGAGTGAATCAAAgccattacaaatgtaaaatgtttttgtatttgaaaacatcaCTTATTTGATGTTTCTGTCTCCCTCCAGCCCCGTGAGTATATGCTGTGTAGCCGTGTGAATTACCTTGAGATTATTGCTTAGAAAATGTTGAGAAAGGCCTTCACATAGATTgcacattgttgttttgttttttcactctcGCCAGAACAATCAGGATTCCCGTGTGTCCTTGCCTACATAATACATTGAAATCTAATGCTCTGTCCTGCTGATGCATGAACAATGGTAATTGTGAAAGAGTGAGGCTCCTCCACAGTGATTCATGGTGCAGAAAGAGAAGAGGGCTCAATCTACACATTGGTTCAAATTTAAGGAAACACACCTTGTGTAATCatcatcttaataataataaaagagctACAACAACAATGCAGAAGCTGATATGCAAATAGCCAAGCAGGTTTTTCAGTGAAGAAGAATCATAATATTATGTTGTTTTGCTCTACATAACTTCTCCATTTTCCAAACAATTGTCTCAAGCATTTCAGAAATTCTCAcacaacttttttgttttgtttttagcgTGTGCGCAACACAGATACACTATACCATTCCAACTCTACAGTCAGCATGTTGGACCTATGCTGGTATTATAAAGCTTGTCTTTTGAGTCGGGAATAGTCCCTTCGCcatttgggtagtattctctttcttAGATAACTGTAGTTgaattcgcaacctatcattttaggTGAACTCAGTCTATATGGTGAAGCTGCTGGTGTTTTCTGAAACCGAGTGGGAATTGAGCGAGATATCGATGTCAGGTTCCTTTCTGCGCCTCTGGCGGTTGCCGAAGCTCTTGACGAACTTGAGGATGTGGTGCTTGAAGGAGGCTCCAACGAAGGCGTACACAATGGGGTTGAGGCAGCTATGGGCAAGGGCCAAACTCTCTGTGACCTGGGTGGCCTTGTCCATGTGCTTGCTGGCTTCGCAGTCAGTGACCAGGGTGTAGATGACATCCATGGCCCGGCAGAACTTCACAATGTTGTAGGGCAGCTGGGTGACAATGAAAACGCCCACCACGGCCATCAACACCTTGAAGGctttccacttcttcacctggGGGCTCCGAGACAGGACCTGTGCCACCCTGGAGTAGCAGAAGAGCATAACCAAGAAAGGCAGGGCGAAGCTGAGCAGCACCTCCAAGATCTTCAGTGAGGCCTTGGCTGCCTGGGCCATGTGGGAGGGGTAGACAGACAGGCACACCTTCCGCCCGGGTATCTCTCTCACAGTGGAAAACACCAGTTTGGGCATGCCCAGGATAAAGGCTGTTGTCCACACCAGCAGGCAGATGAGGAGGCAGCGGTCCTTCTTGACTCTGCCGGTCGTCACAGCCCAGTAGCGGTCCACACTGATGCAGGCCAGGAACAGCATGCCACAGCTGAAGTTCATGACATACAGGCTGGAGGTGAGCTTGCACAAGGCCACTCCCAGCTCCCAGCCCCCCACCGCGTCGGCCGCCCAAAAGGGCAGGGTGAAAAGCAGGAGCAGGTCGGCGATGGCCAGGTTCAGGATGTACACGTCGGTCATCGTCTTCAGCTTCTTGTAGTAGATGTAGATGGCCACCACCAGCGAGTTCCCAGCCAGCCCAACCACCAAGGCCAGACTGTAGATGATGGGCAGGAAGACCCGGCCGAAGGAGCGTACCTCCTCTTTGTCGCAGATGGTGTGATAGTCCCCGTAGGTGACATTGTAGGTGTAGTTGTAGCTGTCATAACCTTCGTCGTACTCGTAGTCTTCCATCTCCATTGCACCCCGATTGCTGGAAATGACAAGACCCACAGAGAGAAATTGGGATAATTTGGTTTAGTCACTATTTTAGGATTTTCTGCAGGATGACAGAAGAATGAAAATGGagattagtaataataataacattgcagTTTCTTTCACATCCCTGtctgaatttaaaatgacttaCCTGGAATCCATGAGCTTCTTACATGCAAATTACACGTTATAAGACTTTACAACTCTCCCTAATGGCTTGGGAGAGGCAGCACGTGTATGTCCTGCGACCTGTGGGGGCGGACTGTATAGACATCTTGTATGTGTTTAATACTGCAATTGTATTCATTGTTACCAAGCTAGGTGCAGACTCAAAGTTGTGTTCAAATTGTGTGCAGGAAAATGTTCAAGCTCTTCTGTTGTCCAACGTATGCCCCTTGGCTGCTGTTATTTGTTGGCTGTTGTAGCTTATCCATCGTTTAGTATTTTTTTgggtgttgtttattttgag

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46126 lncRNA downstream 355732 42942242 ~ 42942499 (-) True G36907
TU46113 lncRNA downstream 449545 42848457 ~ 42848686 (-) True G36894
TU46063 lncRNA downstream 535497 42762531 ~ 42762734 (-) True G36882
TU46018 lncRNA downstream 715758 42582143 ~ 42582473 (-) True G36841
TU45980 lncRNA downstream 769540 42523163 ~ 42528691 (-) True G36805
TU46265 lncRNA upstream 165501 43526407 ~ 43555509 (-) False G37022
TU46264 lncRNA upstream 190402 43551308 ~ 43555509 (-) True G37022
TU46263 lncRNA upstream 194837 43555743 ~ 43556744 (-) True G37021
TU46277 lncRNA upstream 251458 43612364 ~ 43656444 (-) False AMCG00019768
TU46292 lncRNA upstream 461428 43822334 ~ 43822820 (-) True G37048
AMCG00019760 mRNA downstream 15426 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019757 mRNA downstream 146573 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019756 mRNA downstream 321893 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019754 mRNA downstream 582621 42695829 ~ 42715610 (-) True AMCG00019754
AMCG00019752 mRNA downstream 717847 42561569 ~ 42580384 (-) True AMCG00019752
AMCG00019763 mRNA upstream 8990 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019765 mRNA upstream 195993 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019768 mRNA upstream 216602 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019769 mRNA upstream 443254 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019771 mRNA upstream 514019 43874925 ~ 43877635 (-) True AMCG00019771
TU46040 other downstream 641838 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 753707 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8242787 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 8775961 34510733 ~ 34522270 (-) True AMCG00019645
TU44357 other downstream 11064833 32222064 ~ 32233398 (-) True G35476
TU46276 other upstream 216403 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 1535593 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 3004432 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4531297 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 5161762 48522668 ~ 48523702 (-) True G37806

Expression Profile