RNA id: TU46264


Basic Information

Item Value
RNA id TU46264
length 4180
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G37022
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43526407 ~ 43555509 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCTgaatattttacttattaatCTATAAAAACTTTACAGAttgtacagtttatatatatatatatatatatatttatatttatatctcaAACTACTCAACAAAAAATAGGTCCCcacagatgaaaaaatattgtaCCAAGAGTTCAGGATAAAGGCAGATATGCAGatatacacactgtacagtTTTCCAATGTGAAAAGGGAGCAGGGCCAGGTCAGATACAAACTATTGACTGTACAAAAATAAGGTctgatttaaagattttttatacatacatatatatgtatgtatatgtacacacacacacacatacacatacatacatacatatatatatatatatatactcccCTCTACCATACATTCAGAAAGATAAATTCATAAAACCCAGGTAGTTCCAGATACCTGCAGTCAGAAAATATTACCCACTCCTCAGGAATGCAAAATAAGTATATGTACACTGGGGTGGGATCACAATGCCAGGTTTATAAATAATGCgctgtttgtatgtatgtatatatatatcacgaGGATTCCGTGTTGGCAAAGTCCAAAGTCAAACCAGTTTTGTAGGTGTCCCAGCCAGGGGTGCTTGTGAGCCGTTACACCCGAGGGCTTACAGGGTCCACGGAAACCCGTCAGAATTGCATCACATACCTCCACTTTCTCCAGACGCTCTCTTATGATCGGTTTCGGAGTCGATTGCCTTCCGGAGGGCACTCTGAACTGAGACATGGGGTCAACGCGCGCCTGTCACTTCAGAGGCTGGAAGAAGGATCTTAGACCGTGATCTTGTGACTTTGAGTGTCGGGGTGAGTGTTCTGCTTCCACAGCCCTTTAGGACGATATACATTCTCTATTCCTATGGTTAGTAGGAGTAGTATTGAAGTGAAGGGAAATTTGAATGAACAGATTGTTCAAATTTCCCTCTGGACAGTGCTGAAAGTGCTGTGCTAGGGACCACTTTCAGCACTGTCCAGAGCAGCACATTTCTACAGCCTTTGAAATGAGAGACAGGTTCACATTTACAATCCGTTTAAAAATCGACCTCTGGCACACAAATCCTCAAAGCAATCGAATCTGAATTCATCACTGAAGGGATACTGACAAGTAAGCAAAAGTTatctatataatatttatagGTGAAATACCCCTTAAGTGTGGACTTTATATAATTCAAAAGATCAGAAAAATTGCACTTGACAATGCAACTCCTCCCCCCCACCcgaaaaccatttatttatatatatatatatatataaataaatgtattttctctacTAGATCAATCCTAAAGCAGTGAATATAATGACGTAGAATCCGGATGACCTGAATGTTAATAGTATTGCAGTCGaagttatttacttttttcagtgTTCATCAAAGCCCTTTTACGCGTTTAGAGTTTCACCCCTATTATTACgccagaggaaaaaaaaagttacagttGTAGttctttttaaacacattcttaaaaaaaaaaaaaaaagtgacacattttcctctttttaaGACAAAGGCGGCCAACTGACTATGACACAGACCTGACCCCGCCTACAGACCCTACAAACTAGCTGATGAATCCGAGTTAATGACAGTCTTttgaaagtttatatttaaGGTCAAGGGCAGATCAAGGTAAATATGATAGACTACAAGACCACCATTATGAGACGAGATCCCTCCTCAGCAGAAAGTTATAGTGACGGATTTCATCTGATGAAGTAGTGCACATTGGTATTCCAGTGAATTACAATACTGAGGAAAGttgtggggagggagagagagaatattaGAGGATATCTAACCTAAAATGAAAGctacaatgttgtttttaattcaaaactcATTCACAGATTCTACCAGCAGCTCGTGCTCCTGTGAGGGGATTACTATATAATTTCGATGTCCCCATCTTCCTCCTTTCTCTGGGTCCCTTTCAACAGACCAGCCCTGTGTTCTGGGGGACCAAGCTGATCAAACGTATTTGGCAATGACAGTATTAAGTCTTAGGAAACGACTTTTTGACTTTGTTGCTTAGTTATTCTCCATCCATTTCATTCCAAGACGATGAGAGCACCTTGGCTTAGTCTTTCCAGTAACTGAAGTGATAAAGGCACGGTGGGAGCTGCGTCCTTCCCCAACAAGATGGCACACCCTCAACACTGCATGGTTTCGACTGAAATAAGTCCTGACTGATTCTTTAAAAACTGCTGTCTTTCACAGAAGAGGCTACATTTCTCATTTCCGAGGACTTGGACCGGCAGTTGTGGAGTTGCTTAGCATCACACGGACATTCAAATGGCTCcgtctccatctccatctcagGGCCCAAGCGAGCTACACAGGCAGGCTGGTGTCATTTTGTGGGAAATTGCCTCATGCCTCAAGTCAAAATGGCATGCTATTGACATTAGAAGCGAATAACCACTGGACTTGATCTTTGTACCACAGAAATCTCCAATATTAACTCAAATGTGTCTAAATGTGTGTGCGCAAGTGCGAGAGTGCATGTGAGCGAGAGTGTGTACATTTATTCTGGTTTTAACCTGATTTTAGTTCAAGCTAAAATGTAACTCATTAAAGGTCTTCACTTTACCAAGGGGCCTTTAAAAAAGGAGCTTTTTCCCCACAAAACAATCCAAGTATTGACAAAGAcctaaattcaatatttaaaatataccaatAAAATCTCACAGCCagaattaaagtattaaatataaaaagtgaaagTATGTTGTTGCTtagtgaataaatacaaataaaaatgagatcAGTTGTACCTTAGTGAGTCAATTCGAAACATTGTTTAAGAAATGCCAGACTATACTGCAGActataaatgtaatgaatattattaaaatagtacATTATAACAGATTTAAGTTTTAGTTTCTATGGTAGTGCAGAAAATCCTTCACTTTGGACTTTGCCAACACAATCTCATGTCTAGCCcctaaagataaaacaaaaaataaaaacagtacagaTAACAATCCATTGCATCAAGAATAAAAGGTTTtccattctttcttttctttgctttcttttcatgGAAGGAATCTGAATAGTGTGAGAGTGTTTATCTTCTTCTTtaacttattaaataaaaatatttttaagtgaaactaaaatacatttacatatagaAAATATTTGGTGTAACATATCATTCATCctgaaactgtaaaaaaaaaaaataataataatctttcatttgtaaatgtataagcAAATAAACTAGATGAAATTAGACCAAAAATActacattaaaaagcaaaacacttgGTATAACTTAAGTTTACTCGTCTCGTGTGTCTAATACTGCCGAACAGAAGAGGCGTTTGAAGGAGCCAGTGGTTTCTTCATGCTTCTAAGGAAAAGGTATCTTccaaaggaaaaggaaaaacgTGTGGAAAAGAAGCTGGTCGAGACGAGTCCCTCAGTGGATACCAGATGCATCGTGGGTCTCCAGAGGGAGCTGATGACCCAGCGGCGCGTCAATCCGACGGTCCGGTCTGTGACCTTTCTGTCCTACAGACTAAAACCTGTGGCCTTTGAGCCTTCTAGGGAGGACACAACGTTGACCCGTTTTCTTAAATTCCTTTTTTCCTGCGAGCGAAATCGTAAGGCTTGTTTCTTCCTTATACAAAAATAGACATCAATccaactttttctttctttttctctcctgttAAGACAGGATAGACCCTCCCCCACCACCTGGACTCGgacaaaaaaactattaaaaaagtattacagTACCAATGTTAGCAGGTCCATGTAGCTGATAAAGCACATTAGGCTGAGGAGCAGGGAGGGTGTGCTGGTTTCGCAGCTcccaggtttaaaaaaatgttttggggtTGGCATTGCTTTTCTCTTGGGCCCAAAAAAAACTCCCCCCaagaaaaacctgaaatgtttgcaacacacacagcacagcagttcTGTTGagtacaaaaacataaaaaattaacTCAGGGGGCGTGGAGCAGTTCCTAGAACTCGTCGATCTTCTTCTGCAGGTACTTGAGAATGGAGTCCATGCCCTGGGGGGACCCCCACACCCGCTTGAGGACCTCGCACTCCTTCTCATTGGCCTGCTCTAGTGCTGCCTTAGTGGTGCTGCGGACCAGAGCTTTGGACTCCCGGAGGACCTGGGGCGGGGGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46213 lncRNA downstream 217995 43330289 ~ 43333313 (-) True AMCG00019761
TU46206 lncRNA downstream 248248 43266893 ~ 43303060 (-) True G36977
TU46126 lncRNA downstream 608809 42942242 ~ 42942499 (-) True G36907
TU46113 lncRNA downstream 702622 42848457 ~ 42848686 (-) True G36894
TU46063 lncRNA downstream 788574 42762531 ~ 42762734 (-) True G36882
TU46263 lncRNA upstream 234 43555743 ~ 43556744 (-) True G37021
TU46277 lncRNA upstream 56855 43612364 ~ 43656444 (-) False AMCG00019768
TU46292 lncRNA upstream 266825 43822334 ~ 43822820 (-) True G37048
TU46452 lncRNA upstream 853708 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 881411 44436920 ~ 44443701 (-) True G37174
AMCG00019763 mRNA downstream 152178 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019761 mRNA downstream 208602 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019760 mRNA downstream 268503 43274030 ~ 43282805 (-) True AMCG00019760
AMCG00019757 mRNA downstream 399650 43018109 ~ 43151658 (-) True AMCG00019757
AMCG00019756 mRNA downstream 574970 42975368 ~ 42976338 (-) True AMCG00019756
AMCG00019765 mRNA upstream 1390 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019768 mRNA upstream 21999 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019769 mRNA upstream 248651 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019771 mRNA upstream 319416 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019772 mRNA upstream 327039 43882548 ~ 43929432 (-) True AMCG00019772
TU46211 other downstream 190402 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 894915 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1006784 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8495864 35055019 ~ 35055444 (-) True G35867
TU44748 other downstream 9029038 34510733 ~ 34522270 (-) True AMCG00019645
TU46276 other upstream 21800 43577309 ~ 43656444 (-) False AMCG00019768
TU46596 other upstream 1340990 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2809829 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4336694 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4967159 48522668 ~ 48523702 (-) True G37806

Expression Profile