RNA id: TU46292


Basic Information

Item Value
RNA id TU46292
length 487
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G37048
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43822334 ~ 43822820 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacagtgagagacagaataacaacaaaaaaatcctgcaGCACCCGCAAGGAGTGgaacaaaatccctcctgagatgtgtgcaaacctggtggccaactacgaGAAACGTccgacctctgtgattgccaacaagggttttgccatcaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatgtataacttttttgaaatgcatttttctggatttgtttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttctccctcactgtatcatCTTCGTTAGTAATTGTAAACTAATTGTAAATTATAGTTATCTTCTTGCATAATGGCATTCTAATTTTGCATCCTTTCTGGGTtgatcttttttattgtttttgattatgtTTAAATGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46277 lncRNA downstream 165890 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 265590 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 266825 43526407 ~ 43555509 (-) False G37022
TU46264 lncRNA downstream 266825 43551308 ~ 43555509 (-) True G37022
TU46213 lncRNA downstream 489021 43330289 ~ 43333313 (-) True AMCG00019761
TU46452 lncRNA upstream 586397 44409217 ~ 44410259 (-) True G37171
TU46455 lncRNA upstream 614100 44436920 ~ 44443701 (-) True G37174
TU46528 lncRNA upstream 900954 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 1073679 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 1112703 44935523 ~ 44936756 (-) True G37290
AMCG00019769 mRNA downstream 12629 43804160 ~ 43809705 (-) True AMCG00019769
AMCG00019768 mRNA downstream 108557 43577508 ~ 43713777 (-) True AMCG00019768
AMCG00019765 mRNA downstream 258818 43556899 ~ 43563516 (-) True AMCG00019765
AMCG00019763 mRNA downstream 423204 43369896 ~ 43399130 (-) True AMCG00019763
AMCG00019761 mRNA downstream 479628 43332431 ~ 43342706 (-) False AMCG00019761
AMCG00019771 mRNA upstream 52105 43874925 ~ 43877635 (-) True AMCG00019771
AMCG00019772 mRNA upstream 59728 43882548 ~ 43929432 (-) True AMCG00019772
AMCG00019774 mRNA upstream 223867 44046687 ~ 44056603 (-) True AMCG00019774
AMCG00019776 mRNA upstream 247874 44070694 ~ 44102691 (-) True AMCG00019776
AMCG00019777 mRNA upstream 281676 44104496 ~ 44112240 (-) True AMCG00019777
TU46276 other downstream 165890 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 461428 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 1165941 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1277810 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 8766890 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 1073679 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 2542518 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 4069383 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4699848 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6887928 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile