RNA id: TU46455


Basic Information

Item Value
RNA id TU46455
length 3175
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G37174
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44436920 ~ 44443701 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAAATCCTTGTAcagttttatttagaaatacagaaatattcaaGGCAAATACAGAAATTCTTTATTACCATCTCCAGCAATCAaaaaagccccccccccacacacacacacacataccgctaaaaaaataaaatagaattaaatcaaataaatgagtcaatataaatctaaataaacaataacgAGTAATGTTTTCACTGGTAGGAATAATTGATTTCCGTAATTTAtctggaatataaaaaaaaggtaaatttgCGGTTTAACATGGTGGATGAAACTTTaggtgtattaaaaaataaaggaaaaatacatgagCCAATATAAATGTCAGCGATAtcattttaaagcctgtaaaatATTCTATTTAAATGCAGTGTCTTCGGGGCCGATCTCCATTGTGTGGTTGGAGAGGGTGAGGGGGAACAGGGCTGCTCCAGCGGGGTTGACTTGGATATTACTCGTGCTTCACATCTGAGTCGCCTTTTCAAGGCTCTTGGCTGCGTCCTTCATCTTTCCCACCAGATCCTGAAGTTGTTCCATTGTGCAACTAAACTGAATATCTTCCGACCTCTCTCCACCGTCCTCGACATTCAACGTGATCAAATAGGAAGGCTGATTGACCTTGTGGACGTGACTGTTCTAGAGAAAGAAAAGAGCAACATTTACAATCAAAGCAGCTACATCCTTCTGGTATTGAGTATtactgtaacatttaaaaatacctttattttataCTCCAGGCGCCAAGAAGCGTCACACACATGAGGAGGACATCTGCCTATACTAAAATACAATCAACAACCTTTTACGATTAGTTAAAAACGTGTTAAGTATTAAGATTAATCTCTTCGCTTTTAAaaacttcattttaaatgttttaggaAATTACAGTAATGGCATTTCAACTTATTTGGACAAAAACGAGGCAGAAATTGACTTTCAAAACAGTTGTTTTTACAAAGTTAAATATTATTCTGGCTGAATCTTTAATCAATTTGGAATaagaacaattattattattattattatctgtccACACTGTCTTGGGAACTTGAAACACTATCATTCCAAATCTGGGCACATACATTTATTCCGTTATTGtagaaatttatattttttaaataagcatttctACAATTACACTCCAAATATAATGACACTTTGATTTACAAGCACAAATCACAGCTATGTGTTTGTATTCTAAGAACAATACAGACAAATCAATATAAGAGATTTTAATTCATATCTTGGAAaagcaggaaattaaaataatttgtgtagGGTTATTAACAACAGTGTTAAATACCTGTCCCCTGAACTGCTGTGTGTCTATCATTATGAATGATGGAATAAATCGGCTAATTAAATTAAGGCAATGCTATGTATAGATTTTAagtacaattaaacaaagtataaatatagTCACAGTCTTCCTAATGAGAACATTATTTTATGCTTATGGAATAGCATTTAGAAACTAATTTCACAGAGAATCAAAAACACATGCAGGTTTAAAATCCACCACGACTCACCTTGTCAATATGTTCTccaaattacttttgtttttctataagataaaataattacaaaacgTCACAAGAGCCACATAACATGAccattaaatgttttggaaatataAACCATCGCCAAACCTGGAATTCATTGTAAAACACGTCTATTCTTTCTCCATCGCATTTAAGATCTTCAAGAaatgtgctaaaaaaaaaaaaaaaaaaaacaggaaaagcgTTTTAATTTGCAGCTGCAGTCAGAGACAGGGAGTTGATCATTGACACTGCAAAATCGATCATTACCTAATAGTGGACTTGTCTGCGTTTTGCTTAACGAGCTCCAATATACATGTCGTGGCTGCAGCATGGCAGTGTTTTAATATAGTTGGGTCGATGTGTCCTAGAGCGGGATCACCTAAAattaaagccaaaaaaaaattattatttttttaaaaaaacattactttccACGTCTGATGTTGTCATCAGCAATCTGAAATGCATCGCATATCTGTTATGTTGAAAGCGAACATTTGTTATCTAGGAGCCCAGGACAATATGTACCCATTTTGGCGATATCCAGACCACTACAATTTAGAAACCTATGTTTCCAGAAATGAAAAATAGTCATAAATCCCCCAAAGCGTCAAATAAAAAGTCGAAAATCCCCCCCTCCCTTGTACCTAAATACTACTTTAAATTCGGCTGGAGATCTCAACCGGCGCAACATGAATATTGAAATATGTTCGAGTCCAATTCATACAATTTGCGTACAACAGCTTTCAAACACCGTCCAAGGTCAAACCTCGTATTACAAGCAGTGGAGCATTTAAAGAGCCAGGATACAAACACATCGCCTCCTGCATCCACTCAGATACAATGCCtctatattcattttatttagttgcAGGACTTCTTATGTGCtatgattatattttgttcGTTTACGATGTaacatttttccagttcttattattattttacaaaccaCGAAAAACTGTGCTGAAGCCTAACTGGGGGAGGAAATGTAAACCTCAAATTCACCCACCTAGATTATTGTAATATTACCAATTATGGTTCGTGATTTCACATTTCCTATTTCGCGTATTTTGCATAACCCATAAACACTGCGACCTCACAGCAGACATGTCACTTTAACACTAGttagcatacacacacaaaaagtatatatatatatatatatatatatatatatatatgtctccAATTGTAAGCAGTGTCATTAAGTGCGGTTTTGGAGAATGAACAGTCTACCAATCACCGCAATGCGAGTAGAATTGCATTAACGTGTTGTGAcggaaaataataaacatgctaCTTCATTAAAGTGAAATATCGGATTCGTATATGTACACGGAATACCCACGTTGATGGAAACATTATAAGAATAAATAGAAAGTGTGTTGTGAAAGAACACAGGATTCGAGTCGTTCTCATTTCGGTCTCGAAGCGCTCGGAGCGACAGCGCTGTTTACGCAGCGCTAATGGGTTTGGAAGCAGCCTCTGTTCTTCCGGTATAAATGATTGACCAGCGGTTGTTTTTCTGGTCAGCTGTATTGACAGCTGTATGGATTGTACATTGTCACGTATTGTTACGCATCACACAGCACCCTAGCGGGGTCCTCCGGTCTCTAGCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46452 lncRNA downstream 26661 44409217 ~ 44410259 (-) True G37171
TU46292 lncRNA downstream 614100 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 780476 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 880176 43555743 ~ 43556744 (-) True G37021
TU46265 lncRNA downstream 881411 43526407 ~ 43555509 (-) False G37022
TU46528 lncRNA upstream 280073 44723774 ~ 44735394 (-) True G37232
TU46597 lncRNA upstream 452798 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 491822 44935523 ~ 44936756 (-) True G37290
TU46682 lncRNA upstream 820381 45264082 ~ 45264334 (-) True G37367
TU46735 lncRNA upstream 1018513 45462214 ~ 45463311 (-) True G37413
AMCG00019782 mRNA downstream 53270 44366901 ~ 44383650 (-) True AMCG00019782
AMCG00019783 mRNA downstream 96120 44338512 ~ 44340800 (-) True AMCG00019783
AMCG00019779 mRNA downstream 194974 44239490 ~ 44241946 (-) True AMCG00019779
AMCG00019778 mRNA downstream 247764 44185532 ~ 44189156 (-) True AMCG00019778
AMCG00019777 mRNA downstream 324680 44104496 ~ 44112240 (-) True AMCG00019777
AMCG00019788 mRNA upstream 74150 44517851 ~ 44542980 (-) True AMCG00019788
AMCG00019789 mRNA upstream 111480 44555181 ~ 44557413 (-) True AMCG00019789
AMCG00019801 mRNA upstream 408427 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019799 mRNA upstream 453093 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019800 mRNA upstream 575439 45019140 ~ 45033185 (-) True AMCG00019800
TU46276 other downstream 780476 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 1076014 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 1780527 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 1892396 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 9381476 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 452798 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 1921637 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 3448502 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 4078967 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 6267047 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile