RNA id: TU46528


Basic Information

Item Value
RNA id TU46528
length 4045
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G37232
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44723774 ~ 44735394 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCACttcatttaaagtgtttttgacTATTTTTAATGGCAACTGATTCCATACTATACATGGACTTTACAGAGATAAATGATTCCCTTGAAGTTCAAGTAGCCCACCCCAGTCCCATTAGCACACAACTAGCAGCAACAGGCATTTTCCTTTAACATACAATGTATACTTAACCTGGCCAATGAGATGCTGGTAGGAGCAGGAAATCCTCAAGGTGCTGGGAGACACTGCTGGCTGTTAACAGGGGCTTTTCCAGTTAAACAAAAGACTTGAAAATGTTAGGTTTCCTCCCCCAATAGTCAACAGAAGATGAGGAGTGTAAAAATGAGATGCTGACAAGAGGTTGCATATATAGATGTCCACTGAAGTGATCTCCACAGCATAGGGAAGAAGAAAATGGCTGCAAGATGCAaaccatgctttttttttccatgtaatATCTCTCAACCTGGGCCACACACTTCCAGCCAAACTGTCCTGTTTCTCCCCCTACAAGAGCCTGTGTTTTCAGTTAACGGACACTAGTCACACAAGCATTTTCACTGAACCATCTGTGCAACAAAACAGCCCTTTGTACCTCATAGTATGTCTGACAGAGGCCCAGTGGACACCATCTTGATTATgcaaaaatggaaacaaactgGGTTTTAGAAATACCACAGACAGGTCTAGGACTGCATGTGAATTTTATGTAGTATGAATGATCTGCTGATCCCTGGAAACCAAGTCTCATGACACCCTAATACAGATACAGTGCCAGCCATTGGCAGCAGTGACAAATACGACCATAGGGTTGATAAACtcagaaaaacaatgaataagCACATTGTTGCCTTATATAAAGTATCTTTCCTGTGCAGCGTATCCAtccaaaacactttaaaacctGGGCATTTATGTGTCAAGTTTGTGTCAGTGggatctttacattttaaataaacccaaTAAAGAGGAACAAGAATGTTTATATTTGATTGACTAtgggaatattaaaaaaaacactgcactcTTAGAAAGTGGTTTAGCAGGACAGAACACTAAGgtctttaaagttttttttttttttttttttttaatgctcagGTTTGGCAGCAAGGTTTTAAAAATTGCCAGGTGAACTTTAATCATTAGTTGATCACCTAACCATCAAGGGAGATTTGGAAAACACTGCTTGATGACATTGTTGTAACGTTGTGGTCTGTTACCTCTACCTTTGCATGAaaggaaatatttcaaaagTTCAAATCAACTCCAGGTCCctgttatttgaaataattcatAGAAGATCAAAATTCACTGAGACTTGTTCACTAATTTAGCATTACATTCTTCAAGTCACCAAGTTAATTTGTTGTTATTCAATTAGTCATTATGAACTAGCCCTTAACAGTGAcaatattatgttttcatttaaacccTCAACTGTGTGTTGAAACTTCAAATTATAGGACAATAGTGCTTGACATGTGCTTAAGAGTAAATCTACCTTTCTACATTGTAAGAGCAAAAAGGAGGATTTGGGCTAAAAAGTCAGACTGTGAAATTGGTTTTATTCATAAATCTCAGGCACTTGTGAAACTTCAGAGTATTAAATTATCTTTTGGTTGAAGGATTAACTTAATaaacactgctttttaaaaatggtgcAAAGGAACCAAAAATGACAAACTGCGAGGGTAGTACTGAAACCAGAGACACTTGATTGCCTTTTGAGTGTTAacctagtttttattttattgccctTGAGCACTTGTCCATGAATGTTAGAATATTTAAAACTGCTACCTCCTCCTTCCACACATGCACTTTAAACCACGACCTGCCTGACAAGTTAACCATTTTTCTAAGGGCACATAAAGAATAGTGTCCTGAGACAAGCAGAAAACCAAGACTACAAACTGTTATTACTTTTACAATTTTGACTATTACTCTTTCATGGTTAATGTCAAACAAATTACAGGAGCACAAATGCTAACGGTTGGCATTATACTTTTACCTTGCCTATAATAAAAGTAGGGTATCAAAATGCATCTGACAAAGAATACAATGGATCTCTGAAAGGGTTAGGTGTCGTTTATCAATAATTGTTTCCATGTGgtagaatgtatttaaaaaaaaaaaagaatgtctTAAACCAGCATCTTAAGAAAATACAGCTACTCCAGTGGGGAGACAATATTTTCATGTTGAAAATGACAATCAGAGACAAACAGTGAAAGATGCAATGACAGGGTAATAAAACATTTAGGAGGGTTATTATTGTATAGATTATAAACTACATCTTTAATGTTAACCATGAAATGGTTTGCCaatgtgaacaaaaaaaaaaatgggaggggtggggtggataaacaaaaaccaaggagtttatttgtatattctgTGGTTACTCAAACTACAGCTCTGTACTACGCTTTTACACAGGGTTGCAGGGAAAGATCATTCTGAAGTGGTGCATTCCAGGAGTGAGCTATAgcctataaaataaaagtaagatTCTTCTTCGAGGACAATGCACAGGACTCTAGTTTTAACAGTAAGGCCACTTTAAATAGTTATTCTTGTAAAGCAGATCATAACCTTTTCCCTTTCCCACAGTTTCGCAAATGTCCCTTTCTTCGGGCATAATGTCTTCAagttcaaaacagaaaaaaaaaaaaaaatcagttgcCCTCCTTGAAAAGCAATGGCATTCTCAGGATCCAACACAAGGTGAGTGACTCAGTATCCATTGATGCACACCTGAGGTAGTAGCCCCTGTCACAAGGCTATAACTCCCACCACAAAAACACTTTGAATTAATTGTGCAGTTTGGCTGCAAAATTGATTACAAAACCAGTAGTTCGTAAAACCTCTGTGCTGCTTGGCATTTCATAGCGATTGTTAAAACCAGATACCTTCTTACCAACTTTTTTTCTAAGTATGATCCACAgtagacaaaatatatatttgtttgttattatttcctGTTCTGGTGCTCTGAGACGAACATGTTCACAATGGCCCTCATGTTTGGTCTTTGCCAGCCGAGTCTGGTCGTTTCTGGCCCGCTTCCGTAAAGGCAGATGTAATCCATAGCTGTAGTTTAGTTACCATGAGTGATTGGATGGGTACCAGCATTCCAGGAAGATGCGAGTGCAGTGTTACTTGTCTCCAAGGACAGCGTACTGGTTGTCAAGCTGCAATTGCTGAGCGGGACCCTTTGCACCGCCGCCACCGCCACCGCCTTCCTCCCGTGCTCTGTTCTTGTGTTTCACTACTTCAAatgttttctccatttctctGTCCTTTTTGGTTTCTACGTGCTTGGCGGTGGCTTGCAGGGAGGGGAACTGGGTATCACTGAAGATTTCAGGGGGCCCTTGTGCAGGCCCTCTCTTCGTCGTGGTCAGCCTGGCTCCAGGGGGTCTGTACACGCCTGATGGCTTTGGTTCGGGCACTTCAACTTCCACAGGTGCAGCTGCCACAGGGGGCGGGGGGCCGGACTTGTTCCAGGGACCTGTTGTCTTGTCCCCGCTGATCAACATCATTTCCCCATCTTCCCCCAGCTCTTCCTTTTTCTCAtactcctcctcttccttttcATCACTCAGTTGTAGAGCATGAACCCTGAGTCCAGTGTAGTCTATTTCCTTCTGCTCAAACTCTTTCCATTCCTCATCCTTTTCCTGCTGGGCGTCTTGATTTTCGTTTTTCGTCgacttctccttctcctttttatttttctttagggTAACTGGTCCGGGGGGAACCGCTTGCTCCTTGCCTTtggttttttctttcttcttctttttgtccCGCTTGGCAAAGAAATCATCCAGGCTCTTCTCTGCACTACCAGTAGTAATATCCgccatatttagtttttaaaaattacaataaaaaacacttatttatttcaaaatctaGAGCGTACGGATTCCCAAATAATAGGAAACCTTTACTCGAGCCGGTCCTCTATACTAGGTTTCTTTTCAGCTTTAAATCAAATGACAATTACTGTTACATCTGTTCCCTGCCTTTCCTCCCTGACTAACATGCTCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46455 lncRNA downstream 280073 44436920 ~ 44443701 (-) True G37174
TU46452 lncRNA downstream 313515 44409217 ~ 44410259 (-) True G37171
TU46292 lncRNA downstream 900954 43822334 ~ 43822820 (-) True G37048
TU46277 lncRNA downstream 1067330 43612364 ~ 43656444 (-) False AMCG00019768
TU46263 lncRNA downstream 1167030 43555743 ~ 43556744 (-) True G37021
TU46597 lncRNA upstream 161105 44896499 ~ 44898892 (-) True AMCG00019799
TU46593 lncRNA upstream 200129 44935523 ~ 44936756 (-) True G37290
TU46682 lncRNA upstream 528688 45264082 ~ 45264334 (-) True G37367
TU46735 lncRNA upstream 726820 45462214 ~ 45463311 (-) True G37413
TU46748 lncRNA upstream 863640 45599034 ~ 45599597 (-) True G37425
AMCG00019789 mRNA downstream 166361 44555181 ~ 44557413 (-) True AMCG00019789
AMCG00019788 mRNA downstream 180794 44517851 ~ 44542980 (-) True AMCG00019788
AMCG00019782 mRNA downstream 340124 44366901 ~ 44383650 (-) True AMCG00019782
AMCG00019783 mRNA downstream 382974 44338512 ~ 44340800 (-) True AMCG00019783
AMCG00019779 mRNA downstream 481828 44239490 ~ 44241946 (-) True AMCG00019779
AMCG00019801 mRNA upstream 116734 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019799 mRNA upstream 161400 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019800 mRNA upstream 283746 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019802 mRNA upstream 533932 45269326 ~ 45279018 (-) True AMCG00019802
AMCG00019805 mRNA upstream 1256678 45992072 ~ 46001203 (-) True AMCG00019805
TU46276 other downstream 1067330 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 1362868 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 2067381 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 2179250 42544116 ~ 42544524 (-) True G36817
TU44832 other downstream 9668330 35055019 ~ 35055444 (-) True G35867
TU46596 other upstream 161105 44896499 ~ 44910150 (-) False AMCG00019799
TU46822 other upstream 1629944 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 3156809 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 3787274 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 5975354 50710748 ~ 50712143 (-) True AMCG00019866

Expression Profile