RNA id: TU46593


Basic Information

Item Value
RNA id TU46593
length 1194
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G37290
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44935523 ~ 44936756 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACCAGAAAACGCTTTTAATTACATATCCATACAATTTGCTTAAAAAGGGGTTTGGTATTATAGCATATATGAGCATGTTCCACTTTGTCATTAGGTCAACTATCACACATTGATGGTGAAGTATTATGAACTGTTAACTATTAATAGTTTGAAGATGGAGATggaaaagtttaaaattaagcTAAAAAAAGTAATCAATTGATTTAAACTGTCAACGTTATAACTTTAAGACTTGTAGACAAGactgttttttatgtaatgaaGTGCATAAGTAAAAGTTTCAAAATGCAGTAAATGCGCTCTGATTTTTTTGGCACCCATTTTTGCTTCATCACGTTTTATCAGATCATGTTATATCGGGGTAGAGGTGTAGTAAGATTCATCAATgttgcaaaatataattaattgtccACTGAGCAGTATAGtagttaaatatttttacacaacatttaaagATCTCCCgaacattacataaattattatgAATCTAAATCATCTcaactttaaattaataataaatacattgtaaaaacaaaattgtctGTCTGTGAAAGCGTCAGTTTCAGTTCCTGTTCCTGAATTCTCATGTTACATCTCACTCAGGAAGCAATGCACATTGagcattattttacagtgttacTGGTCTTTTGAAGTACAGGTTTAGTTGACATTAAATTCAttcctgacatccttggacagttctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacctatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaaaacttttttccctcactgtatatatacttcATATACTTAAACTGACTTTGCCTGGAGGGCAGAGATGCAGATGGCACACTTGGTAGTCCTCCCATCTTCATCATCTTTTGATCCAAGTCTTCTTGTTCTAGTTCCTCCAGTTCAGCCAGCAGCTCATCctgaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46597 lncRNA downstream 36631 44896499 ~ 44898892 (-) True AMCG00019799
TU46528 lncRNA downstream 200129 44723774 ~ 44735394 (-) True G37232
TU46455 lncRNA downstream 491822 44436920 ~ 44443701 (-) True G37174
TU46452 lncRNA downstream 525264 44409217 ~ 44410259 (-) True G37171
TU46292 lncRNA downstream 1112703 43822334 ~ 43822820 (-) True G37048
TU46682 lncRNA upstream 327326 45264082 ~ 45264334 (-) True G37367
TU46735 lncRNA upstream 525458 45462214 ~ 45463311 (-) True G37413
TU46748 lncRNA upstream 662278 45599034 ~ 45599597 (-) True G37425
TU46757 lncRNA upstream 710801 45647557 ~ 45648100 (-) True G37434
TU46758 lncRNA upstream 711645 45648401 ~ 45648838 (-) True G37435
AMCG00019799 mRNA downstream 28023 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019801 mRNA downstream 82673 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019789 mRNA downstream 378110 44555181 ~ 44557413 (-) True AMCG00019789
AMCG00019788 mRNA downstream 392543 44517851 ~ 44542980 (-) True AMCG00019788
AMCG00019782 mRNA downstream 551873 44366901 ~ 44383650 (-) True AMCG00019782
AMCG00019800 mRNA upstream 82384 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019802 mRNA upstream 332570 45269326 ~ 45279018 (-) True AMCG00019802
AMCG00019805 mRNA upstream 1055316 45992072 ~ 46001203 (-) True AMCG00019805
AMCG00019806 mRNA upstream 1169527 46106283 ~ 46133174 (-) True AMCG00019806
AMCG00019808 mRNA upstream 1565091 46501847 ~ 46510145 (-) True AMCG00019808
TU46596 other downstream 25373 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 1279079 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 1574617 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 2279130 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 2390999 42544116 ~ 42544524 (-) True G36817
TU46822 other upstream 1428582 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 2955447 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 3585912 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 5773992 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 6026657 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile