RNA id: TU46682


Basic Information

Item Value
RNA id TU46682
length 253
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G37367
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 45264082 ~ 45264334 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttctgatagaaaggtgtcggaacacacagtgcatcgcagtttgttgcttatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcgcctacaatgggcacgtgagcatcagaactggaccatggagcaatggaagaaggtggcctggtctgatgagtcacgagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatcgagcatctgtggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46593 lncRNA downstream 327326 44935523 ~ 44936756 (-) True G37290
TU46597 lncRNA downstream 365190 44896499 ~ 44898892 (-) True AMCG00019799
TU46528 lncRNA downstream 528688 44723774 ~ 44735394 (-) True G37232
TU46455 lncRNA downstream 820381 44436920 ~ 44443701 (-) True G37174
TU46452 lncRNA downstream 853823 44409217 ~ 44410259 (-) True G37171
TU46735 lncRNA upstream 197880 45462214 ~ 45463311 (-) True G37413
TU46748 lncRNA upstream 334700 45599034 ~ 45599597 (-) True G37425
TU46757 lncRNA upstream 383223 45647557 ~ 45648100 (-) True G37434
TU46758 lncRNA upstream 384067 45648401 ~ 45648838 (-) True G37435
TU46760 lncRNA upstream 414556 45678890 ~ 45679089 (-) True G37437
AMCG00019800 mRNA downstream 230897 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019799 mRNA downstream 356582 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019801 mRNA downstream 411232 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019789 mRNA downstream 706669 44555181 ~ 44557413 (-) True AMCG00019789
AMCG00019788 mRNA downstream 721102 44517851 ~ 44542980 (-) True AMCG00019788
AMCG00019802 mRNA upstream 4992 45269326 ~ 45279018 (-) True AMCG00019802
AMCG00019805 mRNA upstream 727738 45992072 ~ 46001203 (-) True AMCG00019805
AMCG00019806 mRNA upstream 841949 46106283 ~ 46133174 (-) True AMCG00019806
AMCG00019808 mRNA upstream 1237513 46501847 ~ 46510145 (-) True AMCG00019808
AMCG00019807 mRNA upstream 1268355 46532689 ~ 46543036 (-) True AMCG00019807
TU46596 other downstream 353932 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 1607638 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 1903176 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 2607689 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 2719558 42544116 ~ 42544524 (-) True G36817
TU46822 other upstream 1101004 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 2627869 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 3258334 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 5446414 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 5699079 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile