RNA id: TU46748


Basic Information

Item Value
RNA id TU46748
length 564
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G37425
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 45599034 ~ 45599597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaccagtaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagattgagccgtacaaagaattcttttaaaggcctgtgcccacctgatcagtggagttttacagctggacaattgactaagtcgactgtatacgaaagtgtgcagtcatttaaataaataaatttgagtcttaagaaacttgacccttggaacgaacagggccctgctttcctcaaagactttgtcttccagtaactacggtggaaaccctgcttgccaagaagattttgtgcacaactttggagccttcaaaccagtggaaaatctgtttggaaaagactctactttcgcgaaaccccaacttccaggtgcatcgactgagtggaagttcttggacaaagccgaaccggaatgcctttgttccaaaccacacagacCTTGTGCCGTGtactgttatctgagcccgaagacagagaggcctgtCTGcaacgaagttcagataagtttaacagtttg

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46735 lncRNA downstream 135723 45462214 ~ 45463311 (-) True G37413
TU46682 lncRNA downstream 334700 45264082 ~ 45264334 (-) True G37367
TU46593 lncRNA downstream 662278 44935523 ~ 44936756 (-) True G37290
TU46597 lncRNA downstream 700142 44896499 ~ 44898892 (-) True AMCG00019799
TU46528 lncRNA downstream 863640 44723774 ~ 44735394 (-) True G37232
TU46757 lncRNA upstream 47960 45647557 ~ 45648100 (-) True G37434
TU46758 lncRNA upstream 48804 45648401 ~ 45648838 (-) True G37435
TU46760 lncRNA upstream 79293 45678890 ~ 45679089 (-) True G37437
TU46766 lncRNA upstream 209254 45808851 ~ 45822120 (-) True G37443
TU46780 lncRNA upstream 381136 45980733 ~ 45981158 (-) True G37456
AMCG00019802 mRNA downstream 320016 45269326 ~ 45279018 (-) True AMCG00019802
AMCG00019800 mRNA downstream 565849 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019799 mRNA downstream 691534 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019801 mRNA downstream 746184 44852128 ~ 44852850 (-) True AMCG00019801
AMCG00019789 mRNA downstream 1041621 44555181 ~ 44557413 (-) True AMCG00019789
AMCG00019805 mRNA upstream 392475 45992072 ~ 46001203 (-) True AMCG00019805
AMCG00019806 mRNA upstream 506686 46106283 ~ 46133174 (-) True AMCG00019806
AMCG00019808 mRNA upstream 902250 46501847 ~ 46510145 (-) True AMCG00019808
AMCG00019807 mRNA upstream 933092 46532689 ~ 46543036 (-) True AMCG00019807
AMCG00019809 mRNA upstream 946716 46546313 ~ 46590268 (-) True AMCG00019809
TU46596 other downstream 688884 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 1942590 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 2238128 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 2942641 42644324 ~ 42656393 (-) True G36862
TU45993 other downstream 3054510 42544116 ~ 42544524 (-) True G36817
TU46822 other upstream 765741 46365338 ~ 46393098 (-) True G37492
TU47064 other upstream 2292606 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 2923071 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 5111151 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 5363816 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile