RNA id: TU46823


Basic Information

Item Value
RNA id TU46823
length 618
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G37493
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 46427950 ~ 46428949 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgtattattgtatacataattagtgaaaaatgtattaaaaaaaataataataataacattatcaTTCCATAGGTTCAGTGGAGAAGGTGTTATACCAGCTAGCAGACctgatgtattttttagaaCAAAGAAAGACACAAGAACAGTttccaaaaagagaaaaatcaaaCCGAAAACATTTGAGGATACATCAGGCTTGACGGAGATGcagaAGAAAAGCATCAATAAAGGCAATGCTCTTTATAATACTACAACAATAGGcactataatacaattatagtaccaaaacaatttgtattatcACCTTGACCTGTGCAGTTTCTGCTCTCAGAAAGCTGtGTATGCCATCAACAAACTAAGAATGAAGGATTCAGACTTcaataaagcaatacattcaaaagcTCTCACTTCCAAAAGGGCAGTTTTGATGAATCGTTTAAAGTAAATCACGGCAGGGGAAGAGCAGGtcatatatacactaccgttcaaaagtttggggtcacttagaaatctctgtgaaacttgttcagtttgtcttagttgttgaatctttttatgttcatacagatatttacacatgttaagtttgctgaaaataaaagcagttgaaagtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46818 lncRNA downstream 72234 46355083 ~ 46355716 (-) True G37490
TU46780 lncRNA downstream 446792 45980733 ~ 45981158 (-) True G37456
TU46766 lncRNA downstream 605830 45808851 ~ 45822120 (-) True G37443
TU46760 lncRNA downstream 748861 45678890 ~ 45679089 (-) True G37437
TU46758 lncRNA downstream 779112 45648401 ~ 45648838 (-) True G37435
TU46881 lncRNA upstream 209241 46638190 ~ 46672792 (-) True G37539
TU46894 lncRNA upstream 299993 46728942 ~ 46730170 (-) True G37551
TU46905 lncRNA upstream 362078 46791027 ~ 46791485 (-) True G37562
TU46952 lncRNA upstream 398834 46827783 ~ 46832760 (-) True G37608
TU46954 lncRNA upstream 406759 46835708 ~ 46909572 (-) True G37610
AMCG00019806 mRNA downstream 294776 46106283 ~ 46133174 (-) True AMCG00019806
AMCG00019805 mRNA downstream 426747 45992072 ~ 46001203 (-) True AMCG00019805
AMCG00019802 mRNA downstream 1148932 45269326 ~ 45279018 (-) True AMCG00019802
AMCG00019800 mRNA downstream 1394765 45019140 ~ 45033185 (-) True AMCG00019800
AMCG00019799 mRNA downstream 1520450 44896794 ~ 44907500 (-) False AMCG00019799
AMCG00019808 mRNA upstream 72898 46501847 ~ 46510145 (-) True AMCG00019808
AMCG00019807 mRNA upstream 103740 46532689 ~ 46543036 (-) True AMCG00019807
AMCG00019809 mRNA upstream 117364 46546313 ~ 46590268 (-) True AMCG00019809
AMCG00019813 mRNA upstream 445985 46874934 ~ 46881287 (-) True AMCG00019813
AMCG00019815 mRNA upstream 452783 46881732 ~ 46907697 (-) True AMCG00019815
TU46822 other downstream 34852 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 1517800 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 2771506 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 3067044 43298231 ~ 43360906 (-) True G36982
TU46040 other downstream 3771557 42644324 ~ 42656393 (-) True G36862
TU47064 other upstream 1463254 47892203 ~ 47901603 (-) False AMCG00019824
TU47195 other upstream 2093719 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 4281799 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 4534464 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile