RNA id: TU47086


Basic Information

Item Value
RNA id TU47086
length 2033
lncRNA type read_through
GC content 0.36
exon number 2
gene id G37716
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 47906059 ~ 47971592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCATCTTCTCTGAGtccaattttcagctttgcccaacacctggtcgtctaatggttagacggagacctggagaggcctacaagccacagtgtctcgcatcCACTATGAAaattggtggaggatcggtgatgatctggagGTGCTTCAGAAAAGCCGGAattgggcagatttgtctttgtgaaggatgcatgaatcaagccacgtacaaggcttgtcctggaagaaaacttgcttccttctgctctgacaatgttccccaactctgaggattgttttttccagcaggacaatgctccatgccacacagccaggtcattcaaggtgtggatggaggaccaccagatcaaggcCCTGTCAtagccagcccaatctccagacctgaaccccattgaaaacctcaggaatgtgatcaagaggaagatggatggtcacaagccatcaaacaaagccgagctgcttgcaTTTTTGCACCAGGattggcataaagtcacccaacatcaatgtgaaagactggtggagagcatgccaagacgcatggAAGCAGTTAACAcagcatcttttttgttattttaaccagttgtcattttctgcaaataaatgctctaaatgacaatatgtttatttggaatttgggagaaatgttgtcagtagtttatagaataaagcaaaaataataattttacccaaacacatacctataaatagtaaaaccagagaaactgataatttagCAGTGgacttattttttccagagctgtatatatatttatgcacaAAAGgcactcttaaaaaaaaaaaaaaacatacacagtcTGTTAAAAGCATATGCTGGGATGAACTGAGAACGCATTTCAACAATAGAATACATCTATTTaaccatttatataattataagcTATGTTTGAACTGAATATTACAGTGAAGTACAGCATTAAAAACAGGTGCTTGAAGATTGAGCAGATCACATCAGCcctcattacattattttaaacgttttttttttttatcaaaggaTACACCAATCTTGCTTTCTAATTAAATCTTCCAAATCTTTTTTAAGCAGACAACCTAGCTGTTCTCTTTTGCTTGTgaacatgtataaataatggcACTGTTAAGTAATAAAAACTGGTATACAAGCCTTCCTtttatgataaataattaaatatactaaTTATAAATAAGGAATACACAGTATTAGACTAAATTATTATCTTTGTCTTCCTATATATTGACCAACACAGGAGGGCATATGGGACCTGCTTGTAAATGTAGCATTACAAAACAAGGACATCTTAGCATCAGTATATACATGGTACAAGGTTTGTAGGTTGCTGTTATGTACAGGTGGTACTATCTTTTGCATAatctattgttttattgtttgaagtATTACAAAAAGTAGTTGGTTTAAAACCTAGGACAAAAGTATTTTACTCTTCATACAGTCATGGTCAGTCTCAGTGTTGCTCATGTCTGATTGTAGAAACTGTGTGAGGGAATAATATTGAAGAAATATACTGAACTTTGATTCTGGAGTTCGCCAAACTCAGTTCGGTATGCATTCCTGAATTGTAATATGCTCTGAGTATTTTTCTATAGCAGCCTTTAGATTCAGACAGTGCCAtggcttttttgtattttgtggaaGATTAGCTGCTATGAACTACTGTTTGAAGCtttggtttttaaatgttagGATCAACAGGGTAGGATAATATCATTTAGCACttcccttcctttttttttggtttgtttttacttgtgGTATACCTAAGAATTATACTGCACGGTTGATTCCTCTGCTCTGGGGAATAATTggtattgattttatataaaaaaaatggctTCTAAAAATCATTCTCAAATGTGATTGTGAGTTAGCGAATACAGGAATCAATCAAATAATGAAGAAAGTGCAATTGCAGGAATTGTAtcctctgtttttctttaaaggaaTGTTAAGACTCCCTGAGTTAAACTGTTTGCTTTTACAAATGCATTGCCtatatgtatcaaaataaatgagcaaa

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47053 lncRNA downstream 54028 47851603 ~ 47852031 (-) True G37690
TU47039 lncRNA downstream 217543 47687034 ~ 47688516 (-) True G37681
TU47002 lncRNA downstream 605431 47300127 ~ 47300628 (-) True G37652
TU46971 lncRNA downstream 888896 47016837 ~ 47017163 (-) True G37622
TU46954 lncRNA downstream 996487 46835708 ~ 46909572 (-) True G37610
TU47110 lncRNA upstream 127806 48099398 ~ 48099619 (-) True G37738
TU47206 lncRNA upstream 572051 48543643 ~ 48549181 (-) True G37815
TU47230 lncRNA upstream 706584 48678176 ~ 48688913 (-) True G37836
TU47269 lncRNA upstream 895573 48867165 ~ 48867486 (-) True G37874
TU47340 lncRNA upstream 1390711 49362303 ~ 49366167 (-) True G37942
AMCG00019824 mRNA downstream 4126 47892228 ~ 47901933 (-) True AMCG00019824
AMCG00019826 mRNA downstream 27202 47803064 ~ 47878857 (-) True AMCG00019826
AMCG00019828 mRNA downstream 115172 47790564 ~ 47790887 (-) True AMCG00019828
AMCG00019823 mRNA downstream 200175 47690365 ~ 47705884 (-) True AMCG00019823
AMCG00019822 mRNA downstream 238197 47661324 ~ 47667862 (-) True AMCG00019822
AMCG00019829 mRNA upstream 205374 48176966 ~ 48184937 (-) True AMCG00019829
AMCG00019832 mRNA upstream 218545 48190137 ~ 48219430 (-) True AMCG00019832
AMCG00019838 mRNA upstream 406051 48377643 ~ 48400596 (-) True AMCG00019838
AMCG00019839 mRNA upstream 594018 48565610 ~ 48598978 (-) True AMCG00019839
AMCG00019846 mRNA upstream 1214722 49186314 ~ 49198381 (-) True AMCG00019846
TU47064 other downstream 4456 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 1512961 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 2995909 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 4249615 43577309 ~ 43656444 (-) False AMCG00019768
TU46211 other downstream 4545153 43298231 ~ 43360906 (-) True G36982
TU47195 other upstream 551076 48522668 ~ 48523702 (-) True G37806
TU47554 other upstream 2739156 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 2991821 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile