RNA id: TU47206


Basic Information

Item Value
RNA id TU47206
length 2654
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id G37815
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 48543643 ~ 48549181 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTagcttcttttttatttgtatttgtacacaGCATGCAGAATGACAGTATTTCTCAAATATGGTAGGAAAACataatggttttcatttcaaacatgatgtgtataatatatatatatatatatatatatatatatacacacacacacatgaaacagAATTGACTGAATATGTGCAGCATATGACAGTacaaaaacactgcactggTAGAAGAAAGTCAAGGAAAGGTGCTGGCTTATTGCTAAAAGTTTACTttcacaaacatattttttaaaacattacaacagCTATAGTGAGCCACATGTGTACAGCTCAGACATCAGAGCCTTTccattattttctatattttacatCTCCCTGTAGACATTCAAATTATCTTCACATATGGTACAGTTAATAAAAACTCCAAACACGTCAGTGTTTACCTAAGTAACAAAGCATTGCTTTTTTTTGATTGCAGACACAATATACAAACACTCTTTTATACGATCTATAAACATTTTGTAAGACTATAATAAACTGTACGTATTTACAAATAGATatttagcatttcatttttgagAAAGTATAAACATCtaatcaataaacctttatctGCATACTTAAAAAGGCATTATTCCCAAGCTTGcctgaggacttaatgtttacattgaATGGACTCAATCTTCAAGAGATCTacaaattaactttaattttatcTTGATTCGGCACTTACTTTAGCAGATTTTGGAAGATTTTAATTATACCAAATTCACATAAATGTATCCCAGTTAATATATTTTGGGAGAGCAGAAACTACACTAGAGTGTTCTACATTTTATAATCTTTGGCCAACAATATCTAATTctggaaagttaaaaaaaaacttgagaaaataGATTGGAATTCAAATTCTGGTGGCAAACAGGCAATTCTGAGATATTGCTGATATCACAAACAGATTGGACATGATGAGTCCAAACATCAAACTAATTAACCCAATCAATAGTGTGTAAATGGTTTAGATATACATCTgtgtatgaaaagaaaaaaacacaatgcccaaaaggtgtttttttttccattaattgtGAGGTCTGTAATGTCAGGTATAATTTTAGTACAACCAAAAACAGATTCTGAACAACTTTGGTCAAAACTAGCCCAAGAAAAGGGGTTGCATGTATTTAAagttatacaatattttataacaagcaatatagtttgtttgtatatcATACAGATTTGCAAGTAAATGGAAGTAATGACAGTACCTTTACATAAGGATAGATAGAATAGAATAATAGAATAACGGTAggatagaataataataataataattattattattattattatggatggatggattgaataataataatacattaatactactgttactactactactactaaaaagaagaaaggttTAAGATGTACGGCACCATGTATGGCACAACAGTATAGTTTATAATTGAGTGTTTgaattttttcttaattttctttcccCTAAAGAAATCGTTCTCatcatttaaatttaactttCATTTTACAGTAAAGAAACCTAATAAAGATAGAACTTGTAtgctaaatgttttttattgtaactgtagtgatgttaaattaattgatgccctttattgtaaagtgttacatataaagtaatacaaatacaccTAGAGCTGGAAGGTTTTTAGGCAGTAGTTTGTTTCTTCATGCAAATTATCATGATCagcatttaattacatattcacCAGAATGTACTAATGTGTTtctccaacaaaacaaaacttaactGATTGAGGTGCTACTGTGCTATAGTGAAAGCAGCACAAATACAGCCTAATAATATCTAAGTATCAAcccatttaaaacacagagagaacaggAATCAGAGATTCCAGAGACACAGCATATCTGTTCCTTGTGAAGTGAAAGACAGGATGCATGCTCTCATTCTACAGTAAGCTGCCAATTTCACACTCATTTTAACTTCTGCGGGAACGGCCCACTCCTTCCTTGAACACTGCCCCTTCTGTGTTTAATCACTCCTGCGTTGTCATATTGATGCTGCCTAAATGCAAATTGTTAAAAGAAAGCTACTAGTctgcacaaaattaaaacactgctgtGCTAGATCGTGTTTAATAGATCAGAGATTTAAACATATAACATCCCACAGGATCATGAGTTGAAACTTcctgcaatattaatatatgaGTAACCTTAGCTGACACtacaataaacacaacaaactcatttaaaaataaaatactacataaaaaatatattttttagaaagcTTTCCATCTTGATGCTCTTGTTCTGCATCTATATACAGTGTGTTTGTACTAGTATAAATTACAAAGGTTCTGGCTTGCATGATGGCAATTTTTCTGAATACTCTTAAAACCATCTTGCCCTGGAGacacaaaaataatagaaaaggaaaataaacaatacagagaaatcTGTGGGTCCATCTCTCCCATTAGCCACAAGTACAAGGGAGATTTGGCAGAGAGTTTGGGGTTCATAGATCAGTTTTTTTACTATCAACGGTCTAACCAAAAACCAAGTTTATATAGTTCAGTTACCTTAGAAGGCAATTTCATAGTCAGTGCTGTCCAACTGAAATGAATTATTCTTGGAGGACAATGCACACAtccaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47110 lncRNA downstream 444024 48099398 ~ 48099619 (-) True G37738
TU47086 lncRNA downstream 572051 47906059 ~ 47971592 (-) True G37716
TU47053 lncRNA downstream 691612 47851603 ~ 47852031 (-) True G37690
TU47039 lncRNA downstream 855127 47687034 ~ 47688516 (-) True G37681
TU47002 lncRNA downstream 1243015 47300127 ~ 47300628 (-) True G37652
TU47230 lncRNA upstream 128995 48678176 ~ 48688913 (-) True G37836
TU47269 lncRNA upstream 317984 48867165 ~ 48867486 (-) True G37874
TU47340 lncRNA upstream 813122 49362303 ~ 49366167 (-) True G37942
TU47349 lncRNA upstream 928198 49477379 ~ 49477584 (-) True G37950
TU47412 lncRNA upstream 1223323 49772504 ~ 49772734 (-) True G38007
AMCG00019838 mRNA downstream 143047 48377643 ~ 48400596 (-) True AMCG00019838
AMCG00019832 mRNA downstream 324213 48190137 ~ 48219430 (-) True AMCG00019832
AMCG00019829 mRNA downstream 358706 48176966 ~ 48184937 (-) True AMCG00019829
AMCG00019825 mRNA downstream 608390 47925796 ~ 47935253 (-) True AMCG00019825
AMCG00019827 mRNA downstream 621388 47909547 ~ 47922255 (-) True AMCG00019827
AMCG00019839 mRNA upstream 16429 48565610 ~ 48598978 (-) True AMCG00019839
AMCG00019846 mRNA upstream 637133 49186314 ~ 49198381 (-) True AMCG00019846
AMCG00019847 mRNA upstream 675717 49224898 ~ 49268250 (-) True AMCG00019847
AMCG00019850 mRNA upstream 746829 49296010 ~ 49306938 (-) True AMCG00019850
AMCG00019851 mRNA upstream 817791 49366972 ~ 49375625 (-) True AMCG00019851
TU47195 other downstream 19941 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 642040 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 2150545 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 3633493 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 4887199 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 2161567 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 2414232 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile