RNA id: TU47340


Basic Information

Item Value
RNA id TU47340
length 3841
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G37942
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 49362303 ~ 49366167 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTTTATTGTAAACTGAAAGTAAACAATGTAAACTAAGAACATGTATGATCCATttggaaaaaagacaaaatgaacaaatggtAGAACTACATGAACAGACAGAGCAACTAAtaaatgattataataaaacaaaaaatgacattcacatactttgcacaaacaaacaccaacaGCTGCTCTAAAACAGGCTGTTCCACAACCTCAATCATATCGTGTTCAAAATACTGTAAGGCAACCAAAACTGCTCCTGGGTGTGGAACAGGGCTGGCCTTCTGTCCCTCCTGGAGCTGAGCGAGACACGGAGACAGAGAGATTGTCTGTGTGCTCTCGACGAAGATCACAAAACACATCTGCTGCTGCGGATGTCATTGTGCGCCCTGTGTAGGACATCGCAGAACACAGGGAACGCCACacaaatttattttgattacagaTTAACAGCACACAAACCCggacactacacacactcttGACGCACAGCTGCACCAAATTTGCGTTGCGGATTGCGAcaggaaaaaactgaaaaagtgcCCAACGAGCGACGAGGCCGTTCCTGAAGCGATGAAGTGAGCCGGTTTTGGTCAATGCTATTCTTTCACAGTATCTCTTGGCCAGATGAGCGGCTCTGGGGGTGCGTGTTGTCGAGAGACAGATTTGATTGCATCCACAAACTGCGCTACAAAAAGTGTGGAGCCAGAACAAAGCACGGCATGAAAACGGATCCGACAATTGTGCATGGACAACACACGGACAGCAATAGGGACAACTATTATGGTAATCATACAGATAAAGACTTGAACCAGATCATAAACCTTGATATAGGactgtaaatatacaaattactTCTAATGATAATGTTTTACTTATAGAGTAAGAAACTGGGTACAGAAAGTCTGCTTGTAGGAGTAGTAAATAGAGGAGGGAActgcatttagtttatttagtttagtttttatacCATAACTGTCCAAAACCCATACTTTGCAGTGGCCCATTTACAGCTGCTGTTTTGCTCTATAAACACTTGTCCTTTGTCGATGATAAAATTGACACTGAAATAATTGAGGAGGTTGGATTAAAGGACACAGTTACCTTTATCATtgtgtacaaataaaaagtCGGTTATTTGTGCACAGAGGCCGGACAGAAGACTGGATTCTAACACCTTACAAATTTGTAGACGCTTCACATTCTCctaaaacagaatacaattcTTCCCAAGTgaatttagattaaaaaaaaaaatgtagtgttttgttgttgtggttgtttatGTGATGCAGACAAATCAAATGGTCAAACTCCTAACGTTGCACAATAAGACCACAGAGCTGTGCGTTTGCCAATCAATTGCTGATTTCAAACCTTGGCGTCGTAATGCCTCAAGACGTGAGCTTCTTTCCCTGTATAGAGAGAGGGTTTCTACAGGCATCCCCTGTCAAATACAAGGGCTTCATGTTCACATTGGAGTATCTTTTAAGCCACCAGTTTCTTCTTTAAGACCCGTGTGTTACGAGTTGTCCGAGAGAGCCGATCGCCTCGCAGGGCTGTTGATGAACAAGCAGAAGCTTTCACAGTGAATCTGTTCTTTTAAAAGGTGCACACGGTCACACGAACAAACccagacacacgcacacccacacacacgcacagcacAAGAAACTCGACCAAACACACTATGTTTGCGGCCTCCCCATAAGGCATACAGAGGTGaaatttcaaatacaaagaaCATTGTCTGAACTACATTGGGATAAACTTCTGTACAGAGAACTGCAcgatacaaaaaacaacaaaacatagaAAGGCCAGACACACCTACACTGATAAACTAGACTATTTACAATTGCTTTTTTCTTGACAGCATTAAGAGAGAGTTTGAGAGCTTATAGACCGTCAATGTCTTATCGAAGCGCCTGGGGTGGAATTACTCTCCTGATAATTTgcggatttgtttgtttaaaattgcTAGCCAGGGTCAGGAATGACATGCTAATTGAATTAATGGCTTTTTTAAACTAGCTGGCCACCCCGTCTCCCTGCCCTTTGAATTAATTCTCTTTTGCGATTCCCGGGTGTTTGTGCCATCATGTGACCGTGAGCTCCCAATCCGAGCAGCTGGATTTCACATCGTGCAGAGGTCAGCGATGGCGCTGCACAAGCCCAGATGGTACAGACAGCCCGACTTATAACGGTTTAcagcaaagcaaattaaaaaaactaaattaataaataaagaaaaagccaaGAAAAACCTCCAGTACTCTCACATGGATCAGCAATATTTTGCCAGGAGAAAAGTCCCCATTGCCCAACAAGTGGCTTTTCCAGTCAGCTGATTGGGACTTGACGGTATTACTCAGTATTAGCTCCACACCCCACCTCTCACCGACTAGGGTCGTACCATCAGGTCACATTCACTGTGCTTCACTCTACTGTGCCATGAAATAAAACCCGGGTCGTCACAGTCAACAGGCCTGCGAAGCCTCGgtcacagtacagcacacaggGTCCAGAGCAGGAAGTCCAGTGCAAGACACGGCTGCTCAACGCCACCCACAGTGCAGAGAGATGTCTGAAAGCGGGGGGAATAAACCACTCTGGCACACTGAACCCAGGTAAATGAGCAGGAGGGACCTCAGCCCGAGACCCTCCCTGGCACGGCTGTGATGGCTCACATGGGCTTCCACAGCACTGCAGAGCAGAGAATATCAAACCACACTGGCATGAATGCGGTCTCACTGGGCCCAGCTGGCTTCACAGATCAGTGGAGTTCAGATCCAGGACTCACTGGTCACATTGTACGACACGAACCTCAGCACTGGCATTGAGTCACACAGTGGTTCTGttggatttcagtttttttttttttttaagctgccattaaatcattcaaaacttGCCAAAATGCCCAAATGAAATGAATCTCGCTATTGTCTCTCTCCTTTAAGTTCACTGTCTAATGCTGGACTCAGTGGGAGAGGGAAACTGTCACAACTGACATCTCACTTCTCTAGCCTGTGGTGGGGAGGAATATCAGCCAACACAGTCCACACACCCTGCCATCTTCACAGAGTCCTGGAAATAGAGCTCTCACTCATCGAGGCTCAGGAGAACAATGTCCTCCACGATCCAGATTCGCAAATGCcttgcccccccccacacacatgtAGATGTTAAGAGTTGCTACCTTAAACCTCTGTCATGTTATGCAGTTTCTCTCCAGCAGAGACTAGCCTGCAAAGCCAACACACGAGAAAAGAACAGCgatagaaaaaattaaataaaaaataataatatatatatatatatatatacacatacacacatatatactgatCTTAGCACATTCatttcaaaaagagaaaaaaaaaaaaaaaaaaatagatctcCTCTGAAATAGAGCTGCGGCCCGTGGGCGAGGCCGGGCCTGGAACCGTGTCAGACATCCTCTTGCCATCAGTGCTGCTGTGGTTCACGTGTGTTTGTGCAGAACGCTCTGGATGCCGAGAAGTAGAGTTTTTCGttatagttttcctttttttttttttttttgagttgtcatgttttttttccccatcgcCGGTTCCTCGGCGTGGCGGGGGTCCGCAAGGGGCGAATGCAGTGTGCAGATGTGCACTTGGCTCATGGTCAGTCCTGGCACGTTCCCGTCCAGGTGTGGATGTACCTGTGAAGATGGCTGAGGAACATCAGCGGGCGGCCGCGTCCGTCTCACAGGCCGGCCTGCTCTCCTCCTCACAGCGCTTTCTGATGGCCGTTGGCCGAGTGCTTGGCCGAGTCTGGGTCTCCAGCGGTGCTGTTGGAGAGGTGTAGCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47269 lncRNA downstream 494817 48867165 ~ 48867486 (-) True G37874
TU47230 lncRNA downstream 673390 48678176 ~ 48688913 (-) True G37836
TU47206 lncRNA downstream 813122 48543643 ~ 48549181 (-) True G37815
TU47110 lncRNA downstream 1262684 48099398 ~ 48099619 (-) True G37738
TU47086 lncRNA downstream 1390711 47906059 ~ 47971592 (-) True G37716
TU47349 lncRNA upstream 111212 49477379 ~ 49477584 (-) True G37950
TU47412 lncRNA upstream 406337 49772504 ~ 49772734 (-) True G38007
TU47421 lncRNA upstream 521762 49887929 ~ 49888191 (-) True G38016
TU47457 lncRNA upstream 1008320 50374487 ~ 50374712 (-) True G38045
TU47468 lncRNA upstream 1120213 50486380 ~ 50489297 (-) True G38053
AMCG00019850 mRNA downstream 55365 49296010 ~ 49306938 (-) True AMCG00019850
AMCG00019847 mRNA downstream 94053 49224898 ~ 49268250 (-) True AMCG00019847
AMCG00019846 mRNA downstream 163922 49186314 ~ 49198381 (-) True AMCG00019846
AMCG00019839 mRNA downstream 763325 48565610 ~ 48598978 (-) True AMCG00019839
AMCG00019838 mRNA downstream 961707 48377643 ~ 48400596 (-) True AMCG00019838
AMCG00019851 mRNA upstream 805 49366972 ~ 49375625 (-) True AMCG00019851
AMCG00019853 mRNA upstream 175233 49541400 ~ 49584141 (-) True AMCG00019853
AMCG00019854 mRNA upstream 218029 49584196 ~ 49588350 (-) True AMCG00019854
AMCG00019856 mRNA upstream 282753 49648920 ~ 49652027 (-) True AMCG00019856
AMCG00019857 mRNA upstream 333071 49699238 ~ 49707383 (-) True AMCG00019857
TU47195 other downstream 838601 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 1460700 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 2969205 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 4452153 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 5705859 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 1344581 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 1597246 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile