RNA id: TU47468


Basic Information

Item Value
RNA id TU47468
length 2918
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G38053
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 50486380 ~ 50489297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGACTGCGGTGGAATGAAATCCAGAAGCACATTGGATTTGAAGAACTGAGAAAATACATcgcaaaatacatatttacactcAAAGTAGAAAGATAATCATTACgaaatatttgaaattacacacacaagCTGTACTGAGACAAAACCTATACCTGTAACTGATGACCAAGACTCACCCAAACTCACACTTATAACCAGGTAGGTTATAGCCAAAtaaccaaataacattgtggcaAAACTAATTTGTCAACTCCAGGTGATGTGAGAACGTTgtataataacttaaaaaatgtttttagtcCCAGTATCATCAAATGTGACCCACACTTATATTCAAGGAAAACTGATCACTATGTTCTTATAAGTTATCCTGTCCAATAAAGacaagaaatacacattttaagtcTTTATACACCATGTGGAAATGCAGGCGCCATTGTAGAAACACTTCGGCTGACACATAATCCTGGCGATTGTTGATGATTACGAACAACTGAGACACAGTTGttatacacaataataataaattgatgtattttgaGTTTCAAATTACAAGCAAATGTGCTGTAACAGGAACCAGAGGAGCTGGAACAACCAAGCCACCCTTCCCTGCCCTAGAGGTTGAAATTATAAATGTTGACcttttttcctgtcttttctttctatttGCTGAGTAGTGCTGCTTATGCAGTTGGCACAGTAACACCCACAGATGTGCACAACGAATGGGTGACAAACTGGCTTCCCTACactaaatgacagaaaatgtttcAGAGTCCGGGGCAGTGATGACAGTATAACAGGCATATGGggaaacaatgtggggaagcaatcaAAATGCtaaggtatattgtcaaaaattTTGatcaagggcagtaatgttcagactgtactatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagacgcagttcagaggagagcaaccagaccttttccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagatcaaactccccagcaatgtggctgaagcgacaatttgtgaacattcaaaaatagactggataggatccttggatcacttcgttattaacCAAGCACCAGGTTAATAGGTCTTCAAATGCCAAAGAACAGCAGCAAATGACCTTAAATCGGCAACGTGTTCCCAATTACAAGATGCCACAAAAATATTTCactcatattgttatttatagatGTTAGTAAACTGAAATGTTAGTAAATCTCCTTTGTAGCACTATGCTGATTCCACCTCCGGTACAGggcaacattttaaatgggaTTAAGCTCTACAGGAGTGGAGGGGTATTTTGAACAATGGGGCTCCTGACAGTAATATAGGTGGGCAAAACGTGTGCTTTGTCTCTGTAAATTAGTTAAGGGCCAACTTCAGAAGCAGTGCAAAAAGTGAAGGAAAGGTTTTTGATATGATATATGCTGAATTGTGGACTGTACCATACAAGCAAGGTGGTTTGTGGGTAATGATACATGTCTTGGctgtaagacacacacacattatatatatatattactcaGCAACAAAGGAAATGTCACTTTTTCaagacactgtattttaaagataattttctaaaaatccaaataactttacagagctttattgtaaagggtttaaacaatgttttccatgcttgttcaatgaaccataaacaattaatgaacatgcacctgtggaacggtcgttaagacactaacagcttacagactgtaggcaattaaggtcacagttataaaaacttaggacaatAAAGAGACTgactttctactgactctgaaaaacactaaaagaaagatgcccagggtccctgctcatctgtgtgaacgtgccttagAGATGCtacaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccgtactgtgagacacCTAAgtcagcgctacagggagacgggaaggacagctgatcatcctcgcagtggcagaccatgtgtaacaacacctgcacaggatcggtacatccgaatatcacacctgcgggacaggtacaagATTTACACCAAGaatgcacaatccctccatcagcgCTCAGACTGTGCACAATAGGctgagaggctggactgagggcttgtaggcctgttgtaaggcaggtccttaccagacatcactggCAACAGCGTCGCccatgggcacaaacccaccttcgctggatgtgatttcctgcaagacaggaatgtcagtgttctgccatggctaGCGAAGATCTCAACCCCATTGAGCACGTTTGGGACCTGTTGGAttggagggtgagggctagggccattccccccagaaatgtcagggcttgcaagtgccttggtggaagagtggggtaacatctcacagcaagaactggcaaatctggtgcagtccatgaggaggagatgcactgcagtacttaatgcagctggtggccacaccagatactgactgttacttttgattttgacaccccctcctttgttcagggacacattattccatttctgttagtcacatgtgtGGGAAACCTGTTCAGTGTATGTCTTTGTTGTTGagtctttttatgttcatacaaatattaacacatgttaagtttgctgaaaataaaagcagttaaaagtgagaggatgtttctttttttgctgagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47457 lncRNA downstream 111668 50374487 ~ 50374712 (-) True G38045
TU47421 lncRNA downstream 598189 49887929 ~ 49888191 (-) True G38016
TU47412 lncRNA downstream 713646 49772504 ~ 49772734 (-) True G38007
TU47349 lncRNA downstream 1008796 49477379 ~ 49477584 (-) True G37950
TU47340 lncRNA downstream 1120213 49362303 ~ 49366167 (-) True G37942
TU47537 lncRNA upstream 106899 50596196 ~ 50682349 (-) False AMCG00019865
TU47568 lncRNA upstream 259456 50748753 ~ 50749458 (-) True G38130
TU47573 lncRNA upstream 277500 50766797 ~ 50767409 (-) True G38135
TU47577 lncRNA upstream 295693 50784990 ~ 50786016 (-) True G38139
TU47586 lncRNA upstream 341336 50830633 ~ 50843640 (-) True G38145
AMCG00019863 mRNA downstream 135136 50345149 ~ 50351244 (-) True AMCG00019863
AMCG00019860 mRNA downstream 424256 49998081 ~ 50062124 (-) True AMCG00019860
AMCG00019859 mRNA downstream 635661 49848558 ~ 49850719 (-) True AMCG00019859
AMCG00019857 mRNA downstream 778997 49699238 ~ 49707383 (-) True AMCG00019857
AMCG00019856 mRNA downstream 834353 49648920 ~ 49652027 (-) True AMCG00019856
AMCG00019862 mRNA upstream 4805 50494102 ~ 50509867 (-) True AMCG00019862
AMCG00019865 mRNA upstream 193032 50682329 ~ 50698163 (-) True AMCG00019865
AMCG00019866 mRNA upstream 216543 50705840 ~ 50711614 (-) False AMCG00019866
AMCG00019871 mRNA upstream 430969 50920266 ~ 50921526 (-) True AMCG00019871
AMCG00019868 mRNA upstream 437983 50927280 ~ 50943520 (-) True AMCG00019868
TU47195 other downstream 1962678 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 2584777 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 4093282 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 5576230 44896499 ~ 44910150 (-) False AMCG00019799
TU46276 other downstream 6829936 43577309 ~ 43656444 (-) False AMCG00019768
TU47554 other upstream 221451 50710748 ~ 50712143 (-) True AMCG00019866
TU47623 other upstream 474116 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile