RNA id: TU47573


Basic Information

Item Value
RNA id TU47573
length 613
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G38135
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 50766797 ~ 50767409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCATGAGGTTCTGACTGCCGACGGCCGGTGCGTCTGTCCTGGTCCTTTCGTTTCTTGCTTCCCCTGAGACTACCAAAGCGCTTCATGGATTGCAGGAGGCAACAAAGCAGCAACCAGGGTGAAGCATGCCCGACAGGGGGGTTgagaaaaaagaaggaaaaaaagaaaaacaaacacgtaTACAACAAACAATTATGTCTTTTATGTCCTTCTGAGGACGAAGCTCAGAGGTAGCccacctggaccattctccagGGAGAAAAGAAATCCTTTCAGGAGGCAGCagaaaaaatctacaaaaatgtCAACACACACACGTTGCCCTTGGGAGCTCTCTGCCCTCACACCCTCTGCATGCGGTGAACCTCTCCCACAGCGCTGAGGGGCACAGCTGGCAAGGGCTTCGGTAATCAGACAGACCCGGCAAAGTCACGTGTCTTTCAGAGAAAGTGGCCACTCGCTCGGATGCCCCGTGATATGTCCAAGCCCACACAGGAGCCTGCACTGGCTACGCAGCACAGAGCTCTtccctcgctctctcgctcgctGCTGTATGACAGATACGGCACACTGTGCACTGCTGCTGCGGACTGTCAAGTGCAGCTGTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47568 lncRNA downstream 17339 50748753 ~ 50749458 (-) True G38130
TU47537 lncRNA downstream 84448 50596196 ~ 50682349 (-) False AMCG00019865
TU47468 lncRNA downstream 277500 50486380 ~ 50489297 (-) True G38053
TU47457 lncRNA downstream 392085 50374487 ~ 50374712 (-) True G38045
TU47421 lncRNA downstream 878606 49887929 ~ 49888191 (-) True G38016
TU47577 lncRNA upstream 17581 50784990 ~ 50786016 (-) True G38139
TU47586 lncRNA upstream 63224 50830633 ~ 50843640 (-) True G38145
TU47593 lncRNA upstream 78568 50845977 ~ 50850167 (-) True G38152
TU47594 lncRNA upstream 78568 50845977 ~ 50849826 (-) False G38152
AMCG00019866 mRNA downstream 55183 50705840 ~ 50711614 (-) False AMCG00019866
AMCG00019865 mRNA downstream 68634 50682329 ~ 50698163 (-) True AMCG00019865
AMCG00019862 mRNA downstream 256930 50494102 ~ 50509867 (-) True AMCG00019862
AMCG00019863 mRNA downstream 415553 50345149 ~ 50351244 (-) True AMCG00019863
AMCG00019860 mRNA downstream 704673 49998081 ~ 50062124 (-) True AMCG00019860
AMCG00019871 mRNA upstream 152857 50920266 ~ 50921526 (-) True AMCG00019871
AMCG00019868 mRNA upstream 159871 50927280 ~ 50943520 (-) True AMCG00019868
AMCG00019870 mRNA upstream 178463 50945872 ~ 50952372 (-) True AMCG00019870
AMCG00019869 mRNA upstream 196011 50963420 ~ 50965530 (-) False AMCG00019869
TU47554 other downstream 54654 50710748 ~ 50712143 (-) True AMCG00019866
TU47195 other downstream 2243095 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 2865194 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 4373699 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 5856647 44896499 ~ 44910150 (-) False AMCG00019799
TU47623 other upstream 196004 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile