RNA id: TU47593


Basic Information

Item Value
RNA id TU47593
length 4191
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G38152
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 50845977 ~ 50850167 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGACCATGCAGGCAGAGTCTCCCAACACTGCCTGGGGCTTCCATGCCATTGCTGAGAATCAGGGGGTGGGGTCATAGGAACAGAGACCCACATACTGCAGCCTCCAATTAAAGAGCTTGGACAGATCCTGCCCTGACTCCGCCTGATGAGGCCCTATCAATATTACAGGAGATCTGATGAACCCATGGTGGATATACTGCATCCAGAGGGCTAGTTTGGTGGTTAACCCTTGAAAAAACAAGCTGACATGATATAAAAAGCATAATTCCCCATTAATGGATGATGAGTAACCACCtataaaagcatatatatatattatcagaGAGCAGATGTTGTAACTTGGACTGCAAAACTGGCACAAGCTTACATATGAAGCATTATAATGAGGTAACTAACACGGGTGCGAAACTGTATTACTGATGCTTTAAGGTCGCTATGGCCCCTTTCACACTAGCAATCCAACCTGGGTTATGACTCACTTTTTGAGCAAACTGGGTGATGATTTTCCTCCGGATCAAGGGCCACCCGCCCAAGCCAGCCAGCACTGACCCGGGTCAAGTGAGACGAAGGGCATTGCGATTGTAGATCTGAGCTGCTTATTGAACCTGTAGTGTGACCGCAAGTACCCGACCCACTGGACTCGGCTGCTAATGTGAAAGGGGCTTATTAATGGTTTATAGACTGGTTATGTACTGCTATTTGAGGAACCTGATTGATAAATGTTACAGCCTGGTTTATAGAAAGATTCAGAGGCAGCAGACATTTGTTGTGCCCTCCTGTAGGGGGTGCTGAGCAGTTTGGCTGGACCATAGTGTATGCTGTCAGGGCCTGTACCCTATAGAGGACATTTTTACCTTTTATCACGGAAAAAAGACAAACTATGTAGTATTCTATTGTGGCTTCAGAGTTGCCTTCGTGGCACATGTAGCTTATTTAtgacttgcattttatttaagcaatatatatgtatatacattttagcatttatatatacatatatacaaatattttttttaaacgtgtATTGATATACTGTAGATCAACAGAGTCACGCTATGGAGTTCAGTTTAAGGTTTCTTGTGTTTCCAGGCTGGGGGTGGAGTGAGCAGTGAAATGGCGCTAGATTATCGAGTGCTCTTCCCAGCGCGAGGGGTTGCGTTCACAGCACATCCCTTTTTGCAGCAGTCACTTCTGGGGAGCTGCATGGCTGCTCCATTTTGTAATCCGGTTACAGTGTACGCCTGCCATTCCTCACTCTTCCTCacccgtgtctgtgtgtctgtgcgagTGGCTGAGAGTGCGTCCGCTTTTGTTTCATGTTCCTCTGGGTCTGTAACTAAAATAGCCAGCTTGAAAGCAACCCGTCGGCCGTCTGTTGTCCGGAGTCCCATTACAGTAACCAATCCCTCTGGCTCTGACAGGAACACCCCTGCTGACCAgctgctttctctttttttaattttatttgttatgaCTTGTATGCTTTTTAACCGCTGTGTGTTTTAggattaaatgtatttccaacAGGAGAGAACTCCAAACACAACTGCCCACTTCAGTGTCTTTTATCTTTACACTTACAACTGCtacaagattattttttttaagagaagggaaaaacttttttttattgcttattttaatggtttatttattgtgagGTACCAAATGTGTAAACCTGTTTTACTCCTATACCATCCAGCATACctgcatttaattatatagagagagtatatatattaaaataaagaggtTAAGGTACATGAGTCCATTAAACGGTCGCTGACAGACTTTTCTTCTCCTTGAAAGTGCACTATGATACAATATCTAGTTTTGCAGCTGCTAATCAATAGTGTGACGACCGTGCTTTGCAATGGAGACataaagacaacaaaaacacaaagtaacACGCTGAGGAAGGTTGTATACTTTATGAAGCTGCTTACAATACACAATTTCAGCCAGTACTGCCATTTTACTGAGGATATACAATTGCGCTTGTGGGTCACTTGAAGGCGTCCGTCTCTAAGCGCAAGACTGAGACAGAGACTGATGCCGTGGACGCCTTACGCACACAAGTTTTTGCTGCATTTTCTTGCAACGGCCAAGAAGACAAAACCAAGATCTGATCTATAAGTAAAGTCTGTGGTAAACGgagcctttgttttgtttgtttgtttgaagtaTAAATTAATGATAAAGACTGGCATGTTTGACATTTCATCTTGCAGATATCACTGTGCACCGTGATTGGAGCCTAGAGGACACCTCCCTTTGTGTGCTTTGGGATagctgtttttgattttgtctgtctgtcctggACATTGTTGGACACGCAGagagaaatggaaagagaaacCTAACAGAGAGATGTTTCTGTACATAAAAGCCTGGGGATGTGGACTTGTGGATTGGACTGTGGAAACGGAGACTTCCGAAGCAAGGGACTCTGTAAGCCCAGAACCCAGTTTCCGCTGTACCCCATATGGTGCcgtttctttttcttaaaattTTTCATTAAGTTGACCCTTGTAAGTTGTTCTGCAGGAGGTTTGTGCCTTCTTACTGAGGAAGCAGGCGGGTCCACAGTGATATTGTGGGGAGATTTTTTGCTTCCTTCACGAGGCAGGGTTTACACACTGATGAAAGGAAGAAGAAACGTGAGGATCTTGTGGATATTTGATTTGCCATTGACTTGATTTGGTCTTGTTTCGCGAAGAGACGAGCCATAacttctctcctcttccctgCTCTCGTCTCTTGGATAGTGTGACATTTGCATCCCTTTCTAAAAGCAGAAGTCGAGAGAGATAAGAATGATAAAGCGCTTAGGTTGAACGTGCGGAGCAGAAAGTAAGGATTGTTAAACGAACACCGGATCACAGAAACAGAAGGTCAATGCGTACACATGTTTCAGCTGTACTTGAGAAGTATGAAACTTGTTTTCCCATTTCCCATTCTTCTCATTTTTCAGCCCCATTATTTGTTGACTAGTGAAAAACATAACCTGAATCTGCTGTCACACCTACGTTTAGCCTTAATGAGGTCTTTCTTCCCTATATGATGCATATGATTattcaaacatgtttttgttttatttagttttttgtttttggaaaacttTAATCAAGTGATTGTGACAGATTATATCCTATCCCAATGTTTTACTACCATCTGTCTAGCTAACCATGCCTTTTATGCAAATAAGAGCACAAACTAACAGCATTTTCACCTTATAAAGTTTCTGTGTTGATTTGGCTATTTATCCATTTTAGAAACGGGCCCTattctgaaatatgaaatacctTCCTGAAGCTAAGGAGATtataaaacattcacacacTCCCAACACGAGTTCAGTCACTCAGTATGCGAACGATAAGTAACAAATAGTTTAACATTGTTTCCAAAGTGTTAAAgtgaaacatgcatttatttttttccagatgtCTGTGGTCTAAAGTCTTTCTTTTGTCAAGTCTGTCTCTCCATTAGAGATGCAGAAAAGACTAACTTGATAtccattcacttttttaatgGTTGTATGAATTAGAATGAGtttaatatggaaacaaaataccTACTACTGTGTTTAATATTGTCCCAGTTTCAATTTACACATTATAAGATTCCCCTGTTCCATAGTTGATGGCTCTTAGATTTCCTTGCCCTTTCTCTCCTGAACACGGCTGGAGCAGTTTATGAGTGCTGACTGGACAGGGCTGACGATCTTCAggcagaagaaagaaagaaaaacatttgttcaaCAGCCGAATGGGTGAATGACTTGGGATTTCCTTCACATCACCACAGGTTATTTCACATTGTGGCAATAGAGTTGGGGTCAATTGCAGTTCAATTATGGACTCGGAATAGGAGCTGAAGGCATTAGGGTTGTGGGACTGGAAATGACTGGATTGACTTGAGGTGGAATTGAAGAAGAAAAGAGCTGGCCTTGTGGTTGTGTTCTGAATAATCATCTCTGtaatattcacttttttttaatggtaaagCAACTCTTATTTTGCCTCATGATTCCTGTCATTGTATATTTCTAACTTAAACCTCCATATAAGAAAGCGATTAATTAATGTTGTCAGTGTCTTATAAACTATAAAGAACTTAATCTCAGCCTTTACATTAGAATGTGGTTctctttttattatgatttatttatcttctgATTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47586 lncRNA downstream 2337 50830633 ~ 50843640 (-) True G38145
TU47577 lncRNA downstream 59961 50784990 ~ 50786016 (-) True G38139
TU47573 lncRNA downstream 78568 50766797 ~ 50767409 (-) True G38135
TU47568 lncRNA downstream 96519 50748753 ~ 50749458 (-) True G38130
TU47537 lncRNA downstream 163628 50596196 ~ 50682349 (-) False AMCG00019865
AMCG00019866 mRNA downstream 134363 50705840 ~ 50711614 (-) False AMCG00019866
AMCG00019865 mRNA downstream 147814 50682329 ~ 50698163 (-) True AMCG00019865
AMCG00019862 mRNA downstream 336110 50494102 ~ 50509867 (-) True AMCG00019862
AMCG00019863 mRNA downstream 494733 50345149 ~ 50351244 (-) True AMCG00019863
AMCG00019860 mRNA downstream 783853 49998081 ~ 50062124 (-) True AMCG00019860
AMCG00019871 mRNA upstream 70099 50920266 ~ 50921526 (-) True AMCG00019871
AMCG00019868 mRNA upstream 77113 50927280 ~ 50943520 (-) True AMCG00019868
AMCG00019870 mRNA upstream 95705 50945872 ~ 50952372 (-) True AMCG00019870
AMCG00019869 mRNA upstream 113253 50963420 ~ 50965530 (-) False AMCG00019869
TU47554 other downstream 133834 50710748 ~ 50712143 (-) True AMCG00019866
TU47195 other downstream 2322275 48522668 ~ 48523702 (-) True G37806
TU47064 other downstream 2944374 47892203 ~ 47901603 (-) False AMCG00019824
TU46822 other downstream 4452879 46365338 ~ 46393098 (-) True G37492
TU46596 other downstream 5935827 44896499 ~ 44910150 (-) False AMCG00019799
TU47623 other upstream 113246 50963413 ~ 50966929 (-) True AMCG00019869

Expression Profile