RNA id: AMCG00019873


Basic Information

Item Value
RNA id AMCG00019873
length 3282
RNA type mRNA
GC content 0.49
exon number 17
gene id AMCG00019873
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 77166 ~ 103648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCCTACTGTGCAAAGACAAGCCCGACCCAGGCGGCATCCAGCGGCGCATTTGCAGAGGAAGTGGAAACGTGCCGAGAACGCCGCTGTGGCGTCCCGTCCGCGTGACGTTAGTCTCTGGGCTGCATGACGCCTCCAGCCCAGGAGCCATGAATCCCCTGGATGGAGACCCAGACAGGGGAGCCGAGCTGCACAATGGGCACAGCTCACCTTCGGGATTCATCACTTTCTTGGTGGGAGAGGACGGGCAGCTGCTCACTGTGCAGGAGACCGAGGACTCAGGGGAAACCCCTTCCTCAGGGCCAAATCTGCAAGTAAAGAGACCTGTAGGACGTCCCAGGAGGAACCCTTTCAATCCATACACAGACCCGGTGCTTCAGGGAACTGCCTTCCAGGTTCCAGCAGTGAAAACAGAATGGCAAGGCCTTGAAAACCTAGAAGGGGGAAGTGCAGACATGAGAGAGATCAAACAGGAGCCCTTCTCCACACAGCAGGACGGGGGGTGCAGGAGGACTCTGAGGAAGAGGGCACCGGTGTCCAGACCGGGGCACAATGTGAAGAAGGAGGAGGCCGATGACTCTGAAGCTTGTCAAACTCCATTGGTAACAGGAAGGCGTAGGAGAGCGAATCTCTCAGCtgGGCTCTCTGGTAATACTTGTCAGCAGTGCGGAGCTAAATTTTCCCGTCGCGGGGGCTTGTTGGACCACATTCAGTTTGTGCACCAGATGTACCGGCCATACCCTTGTGAACCTAACCACCCCACCATGGCCACACTGAGACCCAAGCAAGAGGCCCTAAAACTGGAGGCGAAGGAGGAAATAGGTTCGGACTTAACCTGCCCAATTTGTGGAGCCGAGTTTTTAAGAAGAAACAACCTCTACgaccacattttatttgtgcatgaGAAGTACCGGCCACACTTGTGCAAGTATTGCAATCAGGAATTCAGAAGGCcgacagaaatgaaaaaacacattgaaagaaCTCACAGAGGAAAACGTCAGGAGACACTCTCATCTCCACGGTGCAAAGAGCGTTCCCTTCCAAATGACTCTTCcactggcatttccaaaagacgTCCTAGGCGGCGTGTCCCTGCCCGGGCAATGTCCAAGAGAACTCGCAGTGTGACTTTCCATGATCGTTTCAGGCCAAGTGATGGGCAGACACCGTCTTCAAAGGGACCGGTCAAGGGGAGTGCTGTAGCCAGCTGTTTTGAAACTCTCAACAGTCAGGCCACACGTTTAACTTCCAGGATTTCCAGGAGCAACCGAGCACAGGTCGCATCTGAGAACAGACGTGGGACATTTCCCAAGGTGTCATGTGACCCAACTGCACAGATGGCGTCGATCAATCCAGTTGACAGTAGAGAGGGCAAACCTGGGGATTACTTTGGTCATATTATCGATGAAAATGAGGCTTCCTTTGATCGGGTGAAAAACGAAAATTGGCAGAGCCCAATGTCATTCGACCAATCTGTGGCTGGAAGGGGCACAGTTGATCAGATTGCCAGTGATCGCACTGTAGATCAGATTTTCAGTGGCAAGGAGACGGGTATAACAGCCACTGATAAGATGATCAAAAGGAATTCTGTGGAAAAGACCTGTTCTAAGGAAGGATACAACAGATGGTCTGAACACAGCTCTGACAGCACTGACCTTGACGAGTTCACACCATGCTGTGATGAGATCAAGAAGGAGCCCACAGACGCAGCCCTGTGGTGTCCGTGGCCTCAGCCCGTAGAGCCCATGCAGAATGCAAttaaagaagagagagaagcagtcACCGAGCAGCTGGTGTACTCCTGTGACATCCCGTTCTGTGGACAGAGTTTCATCGACAAGAGCGGCTTGTGGACACATCGAAAGGAGCATCAGGTTATAGGTTCTGATTTTAGCTGCTCAATCTGTGGAGCCAAATTTGTCCGCAAAGGGAACCTATACGACCACATTCTGTTTGTGCACGAGCACTACCGGCCACACTGCTGCTCGTACTGCACTCGAGACTTTTGCAGGCCGAGAGAGATGAAAAGACACATTGCGACGGCTCACCGAGGAATGAGAAAACGCCGAGGGCTGAGGACTGACGTTCCCAGAGCGAACGGAGCGCACAGCGAACGGACAGAGGACAGGACACTCTGCACTAAAGCGGATTGTAAGGCTGCTGAACCGAATATCTCCGATTGCCTGTCGATGATCCGGATAAGCAATGTGACGTCTCTGGTCATGTCCCAAGACGAATTTCTGCAGATGGCAGCCAGCCTAAAGGATCTGCCTTCTTATCCCCTCTTcagcagaaacagaaaccaaaGAGGAGAATACGTCAAGCCTGATGCATTCGACACACTCGTCAGACGTGCAAACAGGGCCGTGTGCAGGTCGGTGTTCAGAGATTGCGTCACAGATGAGGGGATTGACACGTGAATCTCTCTTCACTTTATGGGAATTTGCTCAGCTACAAAGAACCTGTTCCAATCTGTTcaacattcattcattttccagatgacttagttttttttatacttaatatattaagtaaaaaaacaagtctTGTGTTGAGTGCTTTCAATGCTGTTGAGTCTTCAAGCCCTTTCTGATGTTTTCAACACTGGGCTCCAGGGATCTTATTCAAGCGGCCTCTTTCTAGGTGCAGGACCAGTTCAAAAGGTTGCTCAGATCCAGACTGTGCCACCCCAGGGGGAAGCACACTGTGCTTAGTGCTGCTGGGGAGATCCTTCACAAACTACTATTGCAAGTCTGGGCATTGCTAGAACAGCGTGTGCTCATCTTCTGCCTTCAACAGTCGCCCTGCTCTGTGTTGTGGCTTCGTGCTGCAGAAGGGATCATTGGGCCTGGCATCGCACAGGGTTCAGGGCTGTGTGCGCCCCCACATCCCGGCCTGGTACAGGGATTGTTACAGCAGGTTAGGTTGAGTAGCATTGCTGGTAAAGGTGGAAATCATGATCGAGTTCTTTAAcataaaatctaataaaaatgcaaaaacataattGGTACCAAACAATTTCAAGTCATAAGCCCCAGCTGCAAAATACAAACTGGATTTACATTTGTATACGATACAACAGAAGATTTATACAAAGTGTTAAATACATGGAAATGTCttcaatttacatttcagaGATTGGTGGAGAGAAACTCTCCTCGCTCTGATTCAATTCACTAAAGAGCTTACATACATTCTCCTTAATCATTACGAATTGAGTGTATATAGTTATGAATGTATAGCTGAGGATCTGTTCAATAaaagactattttatttta

Function

GO: NA

KEGG:

id description
ko04070 Phosphatidylinositol signaling system
ko04138 Autophagy - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74150 lncRNA downstream 115957 219605 ~ 220375 (+) True G59289
TU74160 lncRNA downstream 142264 245912 ~ 246217 (+) True G59299
TU74165 lncRNA downstream 164100 267748 ~ 267963 (+) True G59304
TU74167 lncRNA downstream 341984 445632 ~ 446858 (+) True G59306
TU74216 lncRNA downstream 828653 932301 ~ 1002892 (+) True G59351
AMCG00019872 mRNA upstream 1903 48107 ~ 75263 (+) True AMCG00019872
AMCG00019874 mRNA downstream 136711 240359 ~ 270653 (+) True AMCG00019874
AMCG00019876 mRNA downstream 177693 281341 ~ 297312 (+) True AMCG00019876
AMCG00019877 mRNA downstream 281378 385026 ~ 418105 (+) True AMCG00019877
AMCG00019879 mRNA downstream 470110 573758 ~ 575695 (+) True AMCG00019879
AMCG00019884 mRNA downstream 971168 1074816 ~ 1108996 (+) True AMCG00019884
TU74166 other downstream 337950 441598 ~ 445530 (+) True G59305
TU74243 other downstream 971856 1075504 ~ 1078063 (+) False AMCG00019884
TU74774 other downstream 3137791 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 4720165 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 5252124 5355772 ~ 5361863 (+) True G60137

Expression Profile