RNA id: AMCG00019874


Basic Information

Item Value
RNA id AMCG00019874
length 1164
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00019874
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 240359 ~ 270653 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGCCGACAGAGACACCCAATTGCATTGACGAGCAAACGCTCGCGGCAAGCAGAACGCAAGGTGGAGGCGGTTCTGTGCATTTGAAGGAACCGTGTGCGACACAGACAGCACGTCTCCCCGGAAAGCGGGCGGCCATCGGCGTCGTGCGCGGCAGCTGTCACCAGGGCCACAGGCTCTTCGGACACAACAGAGGGAAGCAGTGTGTGCCCAACAGCTTCTGTTCAGTTGTGTATAGCGAGGTGAAGAGCGTTGAGAAGTGGGAGAGTGCCGACCTGGACGCTATCCTGCAGCGCGGGAACGAGCTGTACTCCGAGCTGCAGAGCGCTGCTTCAGTAAAGAACGAGTACACGTTAGTTACTGAACTTCCAGGTCAGCTGGAAGCGTTTGGCACCCGCTGCACCATATCAATGGGCGAGTCGGTGGCCGGGCTGCTGGGCGGGCCTAGTGACAGTGCTGTACCCGGGATAGTGATGTCCCTGGGCGATGCTCTGCAGACAACACTGACTGAGTTCAGCGCTTGTCTCGTGACATTTGCAGCATCGACGTTTGCCGTGATCCGTGGAAGCGGGACATTCCACGTGTTCGACTCTCATCCGAGAAACGTGAAAGGGATGCGAATCGCGAACGGAACCTGTGTGCTGATCACAAAGAACAGCATACAGGAGCGGGACACGAAAGGGATGCGAATCCCGAACGGAACCTGTGTGCTGATCACAAAGAACAGCATACAGGAGGTGACGCAGCACTGTGTCAAACTGGCCAAGTCCCTGAACGCCCACGAGCTCAGCCAGTTCGAGGTCACCGGACTGGATGTTAACTTGTTCCAAAAGATGGCAGTAGGAAGCCAGGCGATCAGCGCAGGGCCACACAATGTAGTTGCAGCCTATGATGGGGACGGGACGGCTGTTGACACCTGGGTCAAGTTCCAACTGAAACGGAAAGTGCTTTTAGATGACACATCATATATCAGGACTATATTTCAAAGAGCCTGCATCTACTGGACCGCTGAGGGCTTTAACCACCTCCATATGGACGTGCCTACTGCCGAGCTGAGGCCCGCACAGTGGCGCTATACTGTACAGATGGCACCACTGCGATCGGGACAGCCCAGCTTCAAACCCAGCGCATGCAacATTGTTATTGAAACGTTTGCAGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74150 lncRNA upstream 19984 219605 ~ 220375 (+) True G59289
TU74167 lncRNA downstream 174979 445632 ~ 446858 (+) True G59306
TU74216 lncRNA downstream 661648 932301 ~ 1002892 (+) True G59351
TU74257 lncRNA downstream 914630 1185283 ~ 1186234 (+) True G59381
TU74261 lncRNA downstream 958293 1228946 ~ 1229205 (+) True G59385
TU74263 lncRNA downstream 993839 1264492 ~ 1264739 (+) True G59387
AMCG00019873 mRNA upstream 136711 77166 ~ 103648 (+) True AMCG00019873
AMCG00019872 mRNA upstream 165096 48107 ~ 75263 (+) True AMCG00019872
AMCG00019876 mRNA downstream 10688 281341 ~ 297312 (+) True AMCG00019876
AMCG00019877 mRNA downstream 114373 385026 ~ 418105 (+) True AMCG00019877
AMCG00019879 mRNA downstream 303105 573758 ~ 575695 (+) True AMCG00019879
AMCG00019884 mRNA downstream 804163 1074816 ~ 1108996 (+) True AMCG00019884
AMCG00019885 mRNA downstream 853881 1124534 ~ 1128690 (+) True AMCG00019885
TU74166 other downstream 170945 441598 ~ 445530 (+) True G59305
TU74243 other downstream 804851 1075504 ~ 1078063 (+) False AMCG00019884
TU74774 other downstream 2970786 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 4553160 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 5085119 5355772 ~ 5361863 (+) True G60137

Expression Profile