RNA id: AMCG00019875


Basic Information

Item Value
RNA id AMCG00019875
length 1497
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00019875
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 235518 ~ 240133 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCAGTTCGGTCTGGACATGCGGTCCTCTGTTTCCTGTATCTGAGCCCCAGGGACCCGCGCAGCAGCGCCGCACACCAGAGCAGTTCATTACGACACCTAACagcactgtcctctctgtcgAGAATTCGTCTCGACTGCCCAGACTCTTAAACGACACAGAAGCTGTTGCGTCTCTGAAGCGGCAGCTGGCCGAGCTGGAGAATGAGCGTCGCCGGGTCAAACTCTCCCTCATAGAGAGGACCGCTCTCCTGCAGAGCgtgcagcgagagagagaccaggCCCAGGCACGCCTGCAGGCCCTGCTGCGAGCGGAGGAGGAGACGCGGTGCGAGACCTCGGCTCTGGAGGAGAGCCTGGCGGAGAGGCTGGCCCGGGCCCACAATGAGAACCGGCTCCTGCGCCAGCAGTTGGCAGCGGCTGAGGACCAGGGCCTGGTACATGAGAAAGCCCTGGCTGAGGAGCAGCAGCGGACCAGAGACAGCCTGGCCAAGATGAAGGCCGACTGTGAAGACAGGGTCCGGAAGGTGGAAGACCGCAACCGGGTCCTCCTCAGGAAGAACAAGAAGCTGCGGGAGCAGATCGCCAAGCAGAGGAGTGAGGAGTCGGAGAGAGAGGTGCCATGTAAGACGCCTTGCAGGAAGGCGAGGGCAGAGGAGCAGGGGCTCGCCTCAGAAAGAAAGGCGACTGACAGTGACGATGTTAAGCCTACTGCTAAAATGACGCCAACAGAGACACCCAGTTGCATTGACGAGCAAACGCCCGCGGTGAGCAGAACGCAAGGTGGAGGCGGTTCTGTGCATTTGAAGGAACCGTGTGCGACACAGACAGCACGTCTCCCCGGAAAGCGGGCGGCCATCGGCGTCGTGCGCGGCAGCTGTCACCAGGGCCACAGGCGCTTCGGGCACAACAGAGGGAAGCAGTGTGTGCCCAACAGCTTCTGTTCAGTTGTGTATAGCGAGGTGAAGAGTGTCGAGAAGTGGGATAGTGCTGACCTGGACGTTATCCTGCAGCGCAGGAACGAGCTGTACTCCGAGCTGCAGAGCGCTGCTTCAGTAAAGAACGAGTACACGTTAGTTACTGAACTTCCAGGTCAGCTGGAAGCGTTTGGCACCCGCTGCACCATATCGATGGGCGAGTCGGTGGCCGGGCTGCTGGGCGGGCCTAGTGACAGTGCTGTACCCGGGATAGTGATGTCCCTGGGCGATGCTCTGCAGACAACACTGACTGAGTTCAGCGCTTGTCTCGTGACATTTGCAGCATCGACGTTTGCCGTGATCCGTGGAAGCGGGACATTCCATGTGTTCGATTCTCATTCGAGAAACGCAAAAGGGATGCGAATCCCGAACGGAACCTGTGTGCTGATCACAAAGAACAGCATACAGGAGAACAGCATACAGGAGGTGACACAGCACTGTGTCAAACTGGCCAAGTCCCTGAACGCACACGAGCTCAGCCAGTTCGAGGTCACCGGACTGGATGTTAACGTGATCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74144 lncRNA downstream 67495 167758 ~ 168023 (-) True G59283
TU74141 lncRNA downstream 136424 96833 ~ 99094 (-) True G59280
TU74184 lncRNA upstream 142519 382652 ~ 382855 (-) True G59322
TU74186 lncRNA upstream 205463 445596 ~ 446868 (-) True G59324
TU74226 lncRNA upstream 307693 547826 ~ 557376 (-) False AMCG00019880
TU74236 lncRNA upstream 692176 932309 ~ 958515 (-) True G59362
TU74264 lncRNA upstream 1024361 1264494 ~ 1264734 (-) True G59388
AMCG00019878 mRNA upstream 215327 455460 ~ 481521 (-) True AMCG00019878
AMCG00019880 mRNA upstream 295698 535831 ~ 572827 (-) True AMCG00019880
AMCG00019881 mRNA upstream 342217 582350 ~ 593396 (-) True AMCG00019881
AMCG00019882 mRNA upstream 628928 869061 ~ 870896 (-) True AMCG00019882
AMCG00019883 mRNA upstream 704765 944898 ~ 945889 (-) True AMCG00019883
TU74284 other upstream 1344786 1584919 ~ 1586000 (-) True G59408
TU74395 other upstream 2084155 2324288 ~ 2327415 (-) True G59505
TU74434 other upstream 2214778 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 2254766 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 2791723 3031856 ~ 3034335 (-) True G59712

Expression Profile