RNA id: AMCG00019880


Basic Information

Item Value
RNA id AMCG00019880
length 945
RNA type mRNA
GC content 0.62
exon number 8
gene id AMCG00019880
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 535831 ~ 572827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGCCCCCCCGCCCGGCGCGGCTCGTCTCTTACCTGCGTCTCCGGCAGCGTCACCCGAGCGGCCCGCCAGCCTCCGCTGCGCCAGGAAGGACTGCGGCTGCAGGCTGTGACGTCCGCACTGGCGCCTCGGGCCCGCCCACAGACCGAGCCCATTGGCTCTCCCAGACCACGGAGCTGGGCAGCAGGAGGGAGCTCAAGTCCATGCCCTTCATCACCTACCTGTCGGGGCTGCTCACGGCCCAGATGCTGTCCGACGACCAGCTGGTCTCGGGGGTGGAGATCCGCTGCGAGGAGAAGGGCCGCTGTCCGTCCACGTGCCACCTGTGCCGGCGACAGGGCAAGGAGCAGGTCAGCCCCACGCCGGTCCTGCTGGAGATCAACCGTGTGGTGCCGCTCTACAGCCTCGTCCAGGACAACACCACCAAGGAGGTACAGCCGGGTCCCGCTCCACCGCAGCTCTGTGATGTGAACTTCGATCTACGCTTTAAACCGACGCCTTCTGTCACAGTGTACAAGAGCTGTGTTGAGCGCCGTCAGGCGTTCAGGAGTGCGACAATGAGCTCGTACTGGTGCGCTGGGAAGGGAGATGTCATCGACAACTGGTGTCGCTGTGACCTGAGTGCCTTCAGCAAAGACGGCCTTCCCAACTGCAGCCCCCTGCTCCAGCCAGTGCTCCGCTTGGCCTCGCACCTGGAGCCCTCGAGCACGATGGTGGCTCTGGAATGGGTCGACATTGAGCCGATCATCGGATGCAAGATCTCGGATTATGTCATCCAGCACAAGAAAGTAGAGGATCCCATGGAAGCCGAGATCTACACAGGATCGAAGCTCGGCATCACCTCCGAGGGCATGAGTCACAGCCCGGTGATGCGCAGTCAAACCAGCGCAattaTGCTCAGTTTTGTTACTCACGAGTATCGGATGGCAGCACAGGGTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74186 lncRNA downstream 88963 445596 ~ 446868 (-) True G59324
TU74184 lncRNA downstream 152976 382652 ~ 382855 (-) True G59322
TU74144 lncRNA downstream 367808 167758 ~ 168023 (-) True G59283
TU74141 lncRNA downstream 436737 96833 ~ 99094 (-) True G59280
TU74236 lncRNA upstream 359482 932309 ~ 958515 (-) True G59362
TU74264 lncRNA upstream 691667 1264494 ~ 1264734 (-) True G59388
TU74266 lncRNA upstream 711598 1284425 ~ 1284745 (-) True G59390
TU74271 lncRNA upstream 774419 1347246 ~ 1347479 (-) True G59395
TU74272 lncRNA upstream 816518 1389345 ~ 1397225 (-) True G59396
AMCG00019878 mRNA downstream 54310 455460 ~ 481521 (-) True AMCG00019878
AMCG00019875 mRNA downstream 295698 235518 ~ 240133 (-) True AMCG00019875
AMCG00019881 mRNA upstream 9523 582350 ~ 593396 (-) True AMCG00019881
AMCG00019882 mRNA upstream 296234 869061 ~ 870896 (-) True AMCG00019882
AMCG00019883 mRNA upstream 372071 944898 ~ 945889 (-) True AMCG00019883
AMCG00019887 mRNA upstream 1301733 1874560 ~ 1889869 (-) True AMCG00019887
AMCG00019888 mRNA upstream 1340614 1913441 ~ 1920755 (-) True AMCG00019888
TU74284 other upstream 1012092 1584919 ~ 1586000 (-) True G59408
TU74395 other upstream 1751461 2324288 ~ 2327415 (-) True G59505
TU74434 other upstream 1882084 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 1922072 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 2459029 3031856 ~ 3034335 (-) True G59712

Expression Profile